Mercurial > repos > greg > gene_family_classifier
changeset 78:5de38d2ef87e draft
Uploaded
| author | greg |
|---|---|
| date | Wed, 22 Feb 2017 08:19:52 -0500 |
| parents | bfc2eb2906f2 |
| children | 887abff6ee25 |
| files | gene_family_classifier.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/gene_family_classifier.xml Wed Feb 22 08:16:45 2017 -0500 +++ b/gene_family_classifier.xml Wed Feb 22 08:19:52 2017 -0500 @@ -112,11 +112,11 @@ #if $create_ortho_sequences: #if $create_corresponding_coding_sequences: - && echo -e "#Size\tName" > $output_ptorthocs - && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t<a href=\"$orthogroups_fasta_dest_dir/"$9"\">"$9"</a><br/>"}' >> $output_ptorthocs + && echo -e "#Size\tName<br/>" > $output_ptorthocs + && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t<a href=\"$output_ptorthocs.extra_files_path/"$9"\">"$9"</a><br/>"}' >> $output_ptorthocs #else: && echo -e "#Size\tName" > $output_ptortho - && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t<a href=\"$orthogroups_fasta_dest_dir/"$9"\">"$9"</a><br/>"}' >> $output_ptortho + && ls -l $orthogroups_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t<a href=\"$output_ptortho.extra_files_path/"$9"\">"$9"</a><br/>"}' >> $output_ptortho #end if && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir || true #end if @@ -124,7 +124,7 @@ #if $single_copy_orthogroup: #if $create_ortho_sequences: && echo -e "#Size\tName" > $output_ptsco - && ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t<a href=\"$single_copy_fasta_dest_dir/"$9"\">"$9"</a><br/>"}' >> $output_ptsco + && ls -l $single_copy_fasta_src_dir | grep f | awk -F ' ' '{print $5"\t<a href=\"$output_ptsco.extra_files_path/"$9"\">"$9"</a><br/>"}' >> $output_ptsco && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir || true #end if #end if