Mercurial > repos > greg > gene_family_classifier
changeset 95:431a63fced68 draft
Uploaded
| author | greg |
|---|---|
| date | Thu, 23 Feb 2017 18:07:05 -0500 |
| parents | 21e1ee8b54bc |
| children | ba924b724a8d |
| files | gene_family_classifier.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/gene_family_classifier.xml Thu Feb 23 17:57:16 2017 -0500 +++ b/gene_family_classifier.xml Thu Feb 23 18:07:05 2017 -0500 @@ -117,16 +117,16 @@ #set out_file = $output_ptortho #end if && mv $orthogroups_fasta_src_dir/* $orthogroups_fasta_dest_dir || true - && echo -e "<html>\n<head>\n<title>Galaxy - GeneFamilyClassifier Output</title>\n</head>\n<body>\n<p/>\n<ul>\n" > $out_file - && for f in "$orthogroups_fasta_dest_dir"/*; do if [ -f "$f" ]; then echo -e "<li><a href=\"$f\">$f</a></li>\n" >> $out_file fi; done + && echo -e "<html>\n<head>\n<title>orthogroups</title>\n</head>\n<body>\n<p/>\n<ul>\n" > $out_file + && for f in "$orthogroups_fasta_dest_dir"/*; do if [ -f "$f" ]; then echo -e "<li><a href=\"$f\">$f</a></li>\n" >> $out_file; fi; done && echo -e "</ul>\n</body>\n</html>\n" >> $out_file #end if #if $single_copy_orthogroup: #if $create_ortho_sequences: && mv $single_copy_fasta_src_dir/* $single_copy_fasta_dest_dir || true - && echo -e "<html>\n<head>\n<title>Galaxy - GeneFamilyClassifier Output</title>\n</head>\n<body>\n<p/>\n<ul>\n" > $output_ptsco - && for f in "$single_copy_fasta_dest_dir"/*; do if [ -f "$f" ]; then echo -e "<li><a href=\"$f\">$f</a></li>\n" >> $output_ptsco fi; done + && echo -e "<html>\n<head>\n<title>single copy orthogroups</title>\n</head>\n<body>\n<p/>\n<ul>\n" > $output_ptsco + && for f in "$single_copy_fasta_dest_dir"/*; do if [ -f "$f" ]; then echo -e "<li><a href=\"$f\">$f</a></li>\n" >> $output_ptsco; fi; done && echo -e "</ul>\n</body>\n</html>\n" >> $output_ptsco #end if #end if