Mercurial > repos > greg > gene_family_aligner
changeset 3:962feb5f0818 draft
Uploaded
| author | greg |
|---|---|
| date | Fri, 07 Apr 2017 13:46:39 -0400 |
| parents | 01c08c35d051 |
| children | 3f75c91767f9 |
| files | gene_family_aligner.py |
| diffstat | 1 files changed, 5 insertions(+), 1 deletions(-) [+] |
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--- a/gene_family_aligner.py Fri Apr 07 13:19:26 2017 -0400 +++ b/gene_family_aligner.py Fri Apr 07 13:46:39 2017 -0400 @@ -50,5 +50,9 @@ proc = subprocess.Popen(args=cmd, stderr=subprocess.PIPE, stdout=subprocess.PIPE, shell=True) rc = proc.wait() utils.check_execution_errors(rc, proc.stderr) -utils.move_directory_files(OUTPUT_DIR, args.output_dir) +if args.codon_alignments is None: + src_output_dir = OUTPUT_DIR +else: + src_output_dir = os.path.join(OUTPUT_DIR, 'orthogroups_aln') +utils.move_directory_files(src_output_dir, args.output_dir) utils.write_html_output(args.output, 'Aligned gene family sequences', args.output_dir)