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changeset 64:8d71c1dff476 draft

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Uploaded
author greg
date Mon, 30 Oct 2017 08:56:01 -0400
parents 77fcf796be0e
children 71619c9e01d3
files test-data/3722.faa test-data/3722.faa.aln test-data/3722.fna test-data/3722.fna.aln test-data/38889.faa test-data/38889.faa.aln test-data/38889.fna test-data/38889.fna.aln test-data/39614.faa test-data/39614.faa.aln test-data/39614.fna test-data/39614.fna.aln utils.py
diffstat 13 files changed, 1978 insertions(+), 26 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/3722.faa	Mon Oct 30 08:56:01 2017 -0400
@@ -0,0 +1,161 @@
+>gnl_Glyma1.01_PACid_16266208
+MANEGKKSNNFYSILGLSKECTELELKNAYRKLAKKWHPDRCSATGNLELVEEAKKKFQEIREAYSVLSDANKRLMYDVG
+VYDSDDDENGMGDFLDEMLTMMSHTKSNENGEESFEELQQLFEDMFQADIGLDGGPSLASSDSSTSSAYMTYSESSSSNK
+RNSSEMNFGKAENSSVFDASYQNFCFGVNQLQDIKKGKGGILGGGGRSRHRSGRKQKMFYGHDV
+>gnl_Glyma1.01_PACid_16266209
+MANEGKKSNNFYSILGLSKECTELELKNAYRKLAKKWHPDRCSATGNLELVEEAKKKFQEIREAYSVLSDANKRLMYDVG
+VYDSDDDENGMGDFLDEMLTMMSHTKSNENGEESFEELQQLFEDMFQADIGLDGGPSLASSDSSTSSAYMTYSESSSSNK
+RNSSEMNFGKAENSSVFDASYQNFCFGTGEPTPRYKEGKGGNSRRRR
+>gnl_Glyma1.01_PACid_16266210
+MANEGKKSNNFYSILGLSKECTELELKNAYRKLAKKWHPDRCSATGNLELVEEAKKKFQEIREAYSVLSDANKRLMYDVG
+VYDSDDDENGMGDFLDEMLTMMSHTKSNENGEESFEELQQLFEDMFQADIGLDGGPSLASSDSSTSSAYMTYSESSSSNK
+RNSSEMNFGKAENSSVFDASYQNFCFGVGHVNYHYQ
+>gnl_Glyma1.01_PACid_16301083
+MADEGNKSNNFYSILGLKKECTELELKNAYRKLAKKWHPDRCSATGNSELVEEAKKKFQEIREAYSVLSDANKRLMYDVG
+VYDSDDDENGMGDFLDEMLTMMSQTKSNENGEESFEELQQLFEDMFEADIGLDGGPSLASSDCSTSSAYMTYSESSSSNK
+HNSSEMNFGKAENSSVFDAGYQNFCFGVNQLQDIKKKKGGILGGGRSRHRNGRKQNMSYGHDVSSNDYPGISTK
+>gnl_Glyma1.01_PACid_16301085
+MADEGNKSNNFYSILGLKKECTELELKNAYRKLAKKWHPDRCSATGNSELVEEAKKKFQEIREAYSVLSDANKRLMYDVG
+VYDSDDDENGMGDFLDEMLTMMSQTKSNENGEESFEELQQLFEDMFEADIGLDGGPSLASSDCSTSSAYMTYSESSSSNK
+HNSSEMNFGKAENSSVFDAGYQNFCFGVGHVNYHYQ
+>gnl_Glyma1.01_PACid_16301084
+MADEGNKSNNFYSILGLKKECTELELKNAYRKLAKKWHPDRCSATGNSELVEEAKKKFQEIREAYSVLSDANKRLMYDVG
+VYDSDDDENGMGDFLDEMLTMMSQTKSNENGEESFEELQQLFEDMFEADIGLDGGPSLASSDCSTSSAYMTYSESSSSNK
+HNSSEMNFGKAENSSVFDAGYQNFCFGTGEPTPRYKEEKGGNSRRR
+>gnl_Medtr3.5_Medtr8g022310.1
+MANEGNKSNDFYAVLGLNKECSDSELRNAYKKLALKWHPDRCSASGNVKFVEEAKKKFQAIQEAYSVLSDSNKRLMYDVG
+VYDSDDDENGMGDFLNEMVTMMSQTKSNENGEESFEELQQLFDDMFQADIGLNGSTSLNASGCSTSSTFMTFSESSNSNK
+RNSTQMNFGKAEDSSSFGANYQNFCFGMKHLQEDVEKEKGGILEGGGSKKQRKGRKQKISCGHVSSNDHPGISAN
+>gnl_Medtr3.5_Medtr8g022310.2
+MANEGNKSNDFYAVLGLNKECSDSELRNAYKKLALKWHPDRCSASGNVKFVEEAKKKFQAIQEAYSVLSDSNKRLMYDVG
+VYDSDDDENGMGDFLNEMVTMMSQTKSNENGEESFEELQQLFDDMFQADIGLNGSTSLNASGCSTSSTFMTFSESSNSNK
+RNSTQMNFGKAEDSSSFGANYQNFCFGVNLVNYHYQ
+>gnl_Musac1.0_GSMUA_Achr6T31040_001
+MAAEEDKSGDFYAVLGLRKECSETELRNAYKKLAMRWHPDKCLASGNAQIVGEAKEKFQEIQKAYSVLSDSNKRFLYDVG
+VYDNDDDNDENGMGDFIGEMLEMMSQTKPNENSQDSFQELQELFVEMFQDDLDAGFGGSIFHDCPWAQPTNGQDCWTSSG
+LHFANGRSKCGNKRGNSAVNLGKVNLEELEHGTSDFYFGLNDAAQPSQGKGGSNNKRRNGRKQKVSSNHDVSS
+>gnl_Musac1.0_GSMUA_Achr9T18140_001
+MAAGEEKIGDFYTVLGLRKECSEAELRIAYKKLAMRWHPDKCSASGNHRRMEEAKEKFQEIQKAYSVLSDSSKRFLYDVG
+IYDNEDDNDEKGMGDFIGEIAQMMSQTKSGENGHDSFEELQRMFLDMFQDDLDAGFGDSSIHSGPQARPTDGLNCSMPSG
+LQFADGGNNGSNKRGNSEKAKLDGLENSSTGFCFGLNDAGQSSKGKGSANSKRRNGRKQKVSSKHDVSSSDAEVSF
+>gnl_Musac1.0_GSMUA_Achr8T23700_001
+MASDMDASGDFYSVLGLKKECSEAELRNAYKKLALKWHPDKCSASGNEIRMKEAKQQFQEIQKAYSVLSDSNKRFLYDVG
+AYDKDDDKDEEGMVEFLGEMAQMMRQTKCCGSGQESFEQLQQMFVEMFHDDLDAGFCGHSSATSGAASCGNKRDNSAMDS
+GKRKPDELDPAAIGFCLGTKDAGQSSKGRGSNSKRRNRRKQKASSKHDNSSHNAKVSA
+>gnl_Musac1.0_GSMUA_AchrUn_randomT02210_001
+MEGDEEKSGDFYAVLGLKKEGSMAELKNAYKKLAMKWHPDKCPASGNKIRMDKAKEKFQEIQKAYSVLSDSNKRFLYDVG
+VYDKDDEEDEEGMGDFIGEIAQMMSQSKPSGSGHESLEELHRQVVEMFLDELDAGDRFSSANQGASSCDGRDDGGGNKRG
+NWAVDWGKEKLNELGPGTGGFCFGVSRRVHSFDLMIDVVHLIHSDLTLE
+>gnl_Orysa6.0_PACid_16843526
+MADGGEKCRDAAGEGGGGGDLYAVLGLKKECSDADLKLAYRKLAMRWHPDKCSSSSSAKHMEEAKEKFQEIQGAYSVLSD
+SNKRFLYDVGVYDDDDNDDDNLQGMGDFIGEMAQMMSQARPTRQESFKELQQLFVDMFQADLDSGFCNGPSKCYHTQAQS
+QTRTSSTSPSMSPSPPPPVATEAESPSCNGINKRGSSAMDSGKPPRASEVGSGQSQSGFCFGKSDAKQAAKTRSGNTASR
+RRNGRKQKVSSKHDVSSEDEMPGSQWHGVA
+>gnl_Orysa6.0_PACid_16843528
+MADGGEKCRDAAGEGGGGGDLYAVLGLKKECSDADLKLAYRKLAMRWHPDKCSSSSSAKHMEEAKEKFQEIQGAYSVLSD
+SNKRFLYDVGVYDDDDNDDDNLQGMGDFIGEMAQMMSQARPTRQESFKELQQLFVDMFQADLDSGFCNGPSKCYHTQAQS
+QTRTSSTSPSMSPSPPPPVATEAESPSCNGINKRGSSAMDSGKPPRASEVGSGQSQSGFCFGQKSDAKQAAKTRSGNTAS
+RRRNGRKQKVSSKHDVSSEDEMPGSQWHGVA
+>gnl_Poptr2.2_PACid_18217800
+MANGGEDKWKSNDLYQVLGLNKECTDTELRSAYKKLALRWHPDRCSASGNSKFVEEAKKKFQAIQQAYSVLSDTNKRFLY
+DVGVDDSDDDENGMGDFLNEMAVMMSQTKPSENMEESLEELQELFDEMFQEDLHSFGIDSQAAPSCPPSYVSYSESSNSN
+NKRVSADMNLGKTKVDDSSSFNSHFEKFCLGTGGTAATFQEGEGGSKRRNSRRSQRQTKARQETKSFFGL
+>gnl_Poptr2.2_PACid_18234651
+MENGGEEKGKSNDFYQVLGLNKDCTATELRNAYKKLALKWHPDRCSASENSRFVDEAKKKFQTIQQAYSVLSDTNKRFLY
+DVGVYDSEDDENGMGGFMNEMAAMMSQTKPHENVEESFEELQGLFEEMFQEDLDSFGIACQATTCVSYSESSNSNDKRVS
+VDMNLKKTKVDDSSGFNSHVEKFCLGVSGTPAIFQEGEGSKRRSSRRNRR
+>gnl_Poptr2.2_PACid_18234649
+MLRMENGGEEKGKSNDFYQVLGLNKDCTATELRNAYKKLALKWHPDRCSASENSRFVDEAKKKFQTIQQAYSVLSDTNKR
+FLYDVGVYDSEDDENGMGGFMNEMAAMMSQTKPHENVEESFEELQGLFEEMFQEDLDSFGIACQATTCVSYSESSNSNDK
+RVSVDMNLKKTKVDDSSGFNSHVEKFCLGVEHQQSFKKGKGVRGGVQGGTGGRERKGRKQEVSSGYDVSSHDHGISAS
+>gnl_Poptr2.2_PACid_18234650
+MENGGEEKGKSNDFYQVLGLNKDCTATELRNAYKKLALKWHPDRCSASENSRFVDEAKKKFQTIQQAYSVLSDTNKRFLY
+DVGVYDSEDDENGMGGFMNEMAAMMSQTKPHENVEESFEELQGLFEEMFQEDLDSFGIACQATTCVSYSESSNSNDKRVS
+VDMNLKKTKVDDSSGFNSHVEKFCLGVEHQQSFKKGKGVRGGVQGGTGGRERKGRKQEVSSGYDVSSHDHGISAS
+>gnl_Soltu3.4_PGSC0003DMP400016105
+MGNDYYAVLGLKKECTETELRNAYKKLALKWHPDRCSASGNSKFVDEAKKKFQAIQEAYSVLSDANKRFLYDVGVYDSGD
+DDDENGMGDFLNEMAAMMSQNKSNENQEETFEELQDMFDEIFNSDNGMSSSSSSSSRTGTPSMCSTTSSTSSSETFFTFS
+NKRSSGEMKSGKGDSCQFQGFCEGTGGASGKSNERERSRRKNSKSGRKQ
+>gnl_Soltu3.4_PGSC0003DMP400016106
+MGNDYYAVLGLKKECTETELRNAYKKLALKWHPDRCSASGNSKFVDEAKKKFQAIQEAYSVLSDANKRFLYDVGVYDSGD
+DDDENGMGDFLNEMAAMMSQNKSNENQEETFEELQDMFDEIFNSDNGMSSSSSSSSRTGTPSMCSTTSSTSSSETFFTFS
+NKRSSGEMKSGKGDSCQFQGFCEGVEHLEKAMKENGVGGKIPRVDGSNRMDAKRQKVLS
+>gnl_Ambtr1.0.27_AmTr_v1.0_scaffold00007.329
+MAPRGEKDSDFYAILGLKKECSASDLRNAYKRLALRWHPDRCSASGNTKFVEECKKKFQAIQQAYSVLSDANKRFLYDVG
+AYGSDDDDQGMGEFLGEMAVMMSQTKPSEKGPESFEDLQNLFQEMFERDLDMFKSSTSHNNNNDNNNNNHRSSDNNNCSS
+VHCFSNTNKRNCSDMNAGEASEVGRFAFSCYATEFLHKQTFSVGADDVRSESSNKRRNGRKQKSTSSSRKS
+>gnl_Aquco1.0_PACid_18141277
+MASEEEASDFYKVLGLKNNCSSLELRNAYKKLALKWHPDRCAASGNSKFVEEAKKNFQAIQEAYSVLSDEQKRFMYDVGV
+YDKDDDDENEDMGDFLGEMMSMMKQENTSADGQQSFEDLQNLFQEMVQNDKEFYNPASQNSSIYNASNNMFSFSNNENLN
+NASNNTFSSFYNENLNSSNKKSCSSMSAENTKVDFNMESLDFRSFSIGLEGGTSFQNSKGRGVTGRRTGRKQKGSSCNDM
+SSHDSKILA
+>gnl_Arath10_AT3G14200.1
+MASSNSEKINENLYAVLGLKKECSKTELRSAYKKLALRWHPDRCSSMEFVEEAKKKFQAIQEAYSVLSDSNKRFLYDVGA
+YNTDDDDDQNGMGDFLNEMATMMNQSKPSDNNTGDSFEQLQDLFNEMFQGDAAAFPSSSSCSTSNFTSSRSFVFDTNSQR
+SSSFATSSMGMNNDPFGYDPRAHSFSLGVDHQQEFKKGKNNGGRRNRRKNNVPSAGHETSSSNNYGVPTS
+>gnl_Bradi1.2_Bradi3g60090.1
+MATGGDKCGGKPAAAGVGGGDLYSVLGVNKECSDADLKVAYRKLAMRWHPDRCSSSSSTKHMEEAKEKFQEIQGAYSVLS
+DANKRFLYDVGVYEEHEEEDDDTLQGMGDFLGEMAHMMSQTQPARQESFEELQQLFVDMFQSDIESGFCNGPAKDHDPVQ
+RQTRTFSTPPSPSPSPPPPLATVDEAASCNGINKRGSSAMGSGKPPRAGEVSGGHGQSEFCFGMSDAKQAPKARGGNASR
+RRNGQKQKLSSKHDVSSGDEMPRPHAAV
+>gnl_Carpa1.181_PACid_16420351
+MADGEDKNNSDLYAVLGLNKECTPAELRNAYKKLAMRWHPDRCSASGNSMFVEEAKKKFQAIQEAYSVLSDANKRFLYDV
+GAYESDDDENGMGDFLNEMAAMMSQTKPNENGNAQESFEELQELFQEMFQGDMGFNTFGSSSQPTTSSCSASSAYATCSE
+TSNPNNNKRNSSEMNYGKKKVDDSSGFHAHFQTFCLGVEQQQDFKKGKEARGGIRGKPGGSRRQGRKQKVSSRHNVSSND
+LGISAS
+>gnl_Frave2.0_gene05408
+MAGGKWVPPPLSQFHLHIKRFRRRQKVSGSSGNTEPSGYTDCKNISNRRMEEKGNDFYAVMGLKKECSDSELRNAYKKLA
+LIWHPDRCSASGNSKFVEEAKKKFQDIQQAYSVLSDANKRFLYDVGAYESDDDENGMGDFLNEMAVMMSQTKPNENGGES
+FEQLQELFEEMFQGDIEGFSSCSQPPTSCSTSSSSYALYCENSTPSNKRNSSAMNYGNATLDSSGFDAHFHNFCVGTGGK
+PAKDREGDARKRKDSRRSNR
+>gnl_Mimgu1.0_PACid_17694730
+MAADEEKSSDFYGVLGLRKECTAAELRVAYKKLAMKWHPDRCSASGNLKYVEEAKNKFQAVQQAYSVLSDANKRFLYDVG
+IYDSEDDADENGMGDFLNEMVAMMGQSKPNENKNESFQELQDLFEEIFNNDAEEVFKIPPPHFPYQDSCSETRTASNKRN
+AREMGSVNFSNIEATPFEGFCIGENVIFGGERIQTRPGGGSRRTKPKISTSIDGLIS
+>gnl_Nelnu1.0_NNU_010544-RA
+MNLLLQKWHPDRCSSSGNSKFVEDSKKKFQAIQEAYSVLSDENKRFLYDVGVYDCDDDDDDENGMGEFLGEMATMMSQIK
+PSENGPESLEKLQELFEEMFQRDMDDGFFSPSPQCASFSSSCSSSSSSTTYFSYNNNKHDNKRNCSDISSMDDFYTFGTD
+SIQFSNFCIGVEGGEDSKVRGGKSRRKSNRRQKVSSSKHDPSCR
+>gnl_Solly2.3_Solyc03g123560.2.1
+MEDKSNDYYAVLGLKKECTDTELRNAYKKLALKWHPDRCSASGNLKFVDEAKKQFQAIQEAYSVLSDANKKFLYDVGVYD
+SGDDDDENGMGDFLNEMAAMMSQNKSNENQGEETFEELQDMFNEMFNSDNGTFSSSSSSSSSWTGTPSMCSTTSSTSSSE
+TFLTFPNKRSSGEMKSGSSVRGDSCQFQGFCVGAGGTSGKCNERERSWRKNSKSGRKH
+>gnl_Sorbi1.4_PACid_1968370
+MDAGGEKFSDAAAAEGGEGGGDLYAVLGLKKECSDADLKVAYRKLAKKWHPDKCSSSSSVKHMEEAKEKFQEIQGAYSVL
+SDANKRLLYDVGVYDDEDDEDSMQGMGDFIGEMAQMMSQVRPTRQESFEELQQLFVDMFQSDIDSGFCNGSAKDQVQGQA
+KSRTCSTSPSSSPSPPPPPTIVKEAEVSSCNGFNKRGSSAMDSGKPPRPVEGGAGQAGFCFGVSDTKQTPKPRGPNTSRR
+RNGRKQKLSSKHDVSSEDETAGS
+>gnl_Thepa2.0_Tp3g12470
+MASNNSEKGNDDLYGVLGLKKECTTTELRTAYKKLALRWHPDRCSSMGTPEFVDEAKKKFQAIQEAYSVLSDSNKRFLYD
+VGAYNSDDEDQNGMGDFLNEMAAMMNQSKPSENNSGDSFEQLQDLFNEMFQGDAAAFSSSSSSSCSASTFTSSCSFVFDT
+NSQRSPFETSSMGTNDLFGFDHSAHTFSLGVEHQQDFKKGKNSGGRRNRRKNNAQSAAHETASSNNYGVPTS
+>gnl_Theca1.0_Tc06_g010450
+MANGEEKNNDFYAVLGLNKECTPTELRTAYKKLALRWHPDRCSASGNSKFVEEAKKKFQAIQQAYSVLSDSNKRFLYDVG
+AYDSDDDENGMGDFLNEMAGMMSQTKSNENGGESFEELQELFEEMFQADIDSFESTGQSTPSCSASSSFGSYGESSSSNK
+RNSSEMSSVETRLESSSSFDAQFHSFCLGVEHRQDIKQHRGARGGMRGAAGGSRRRNGRKQKVSSGHDVTSNDCGISAS
+>gnl_Vitvi12X_PACid_17827068
+MAAGEEKSNDFYAVLGLKKECTASELRNAYKRLALMWHPDRCSSSGNSKFVEEAKKKFQAIQEAYSVLSDANKRFLYDVG
+AYDSDDDENGMGDFLNEMAVMMSQTKSNENGKESFEELQELFEDMFQRDVDAFNSASHHPMNSFPSSTSTSSYCESSNAN
+NKRNSAEMGSGRMMSAGESSAFDAHFQSFCFGTGGTPGRFQEGERSKRRNSRRSQR
+>gnl_Selmo1.0_PACid_15401289
+MEKRKEDPYTVLGVQKSSSSSEIRSAYRKLAMKWHPDKQHSLEDQAKAKFQGIQEAYSVLSDDKKRVLYDSGLYDEGDDE
+VS
+>gnl_Orysa6.0_PACid_16864430
+MARGGGGGGGADADLYAVLGLSRECTDADLRLAYRKLAMIWHPDRCSVAGGSASAAGVDEAKERFQEIQGAYSVLSDSNK
+RFLYDVGVYDGNDGDDDDDEADLSGMGDFLGEMAQMMSQATPAESFEELQQLFVDMFQDDIDAGLCQSTPPPPSWPSPPA
+AANARSPAAAATSRKGVNKRCSPAAMDMDSGLSSLLGISGFCFEAPWTSQDASTAAGGGGGKRRKQRPPPASHNV
+>gnl_Sorbi1.4_PACid_1982925
+MAATSHCGNIQDQDEEASAPGAADLYAVLGLNRECTDAELRVAYRRLAMIWHPDRCSASGSSPARMEEAKERFQEIQGAY
+SVLSDSNKRLLYDVGVYDSDDDEADLSGMGDFLGEMADMMSQATPTETFEELQQVFVDMFQDDLDDAGFFGGLPTTGRRA
+QAPSTSLPPSVSSSPLRPTPAAGRSKGPQATPSSSFKGVERRGSTSTAKRPRPNGSAGLESDLGLSGFCFMVSKEMSKSK
+ERQAVWASDDGDRSTDGKQRLSTSRDVSGGGMSRSLQGQSSKNLLQCMASKS
+>gnl_Medtr3.5_Medtr8g022310.3
+MANEGNKSNDFYAVLGLNKECSDSELRNAYKKLALKWHPDRCSASGNVKFVEEAKKKFQAIQEAYSVLSDSNKRLMYDVG
+VYDSDDDENVRHLFHTIHELGTLFCVMFCFFISLRGEKRSNLNLTFSLSH
+>gnl_Nelnu1.0_NNU_000115-RA
+MEVDSHRSSPSYYTILGVDQNSSASEIRNAYRKLAMQWHPDKWTKTPSLLEKAKSKFQQIQEAYSGGLLVFMLSDQGKRT
+LYDVGLYDPDDETNDEVGLRRFHAGDDISHERCEETGEEIQLGGTTGDVSGNVTRAGVEDGECWWCVVVRWSCSLKEELK
+EGQMGIISESDDAGHDTPSLPHLHGSELELLGRTGCCN
+>contig_7
+ENEWSGAEFLNEMAAMMTQNKSNENGTGTFEELQQLFDEMFQSDIESFNGCSSSSNETCSNSNKRNSIESSSANFRPENG
+NESGEISGKKNTRKGKGDX
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/3722.faa.aln	Mon Oct 30 08:56:01 2017 -0400
@@ -0,0 +1,312 @@
+>gnl_Glyma1.01_PACid_16266208
+---MANE-------------------------------------------------GKKS
+NNFYSILGLSKECTELELKNAYRKLAKKWHPDRCSATG---NLELVEEAKKKFQEIREAY
+S------VLSDANKRLMYDVGVYDS--------DDDENGMGDFLDEMLTMMSHTKSNENG
+--EESFEELQ------QLFEDMFQADI--GL----------DGGPSL-------------
+----ASSDSSTSSA------------------YMTYSESSS---------SNKRNSS-EM
+NFGK---AENSSVFDASY------QNFCFG-VN--QLQDIKKGK---GGILGGGGRSRHR
+SGRKQKMFY-GHDV--------------------------
+>gnl_Glyma1.01_PACid_16266209
+---MANE-------------------------------------------------GKKS
+NNFYSILGLSKECTELELKNAYRKLAKKWHPDRCSATG---NLELVEEAKKKFQEIREAY
+S------VLSDANKRLMYDVGVYDS--------DDDENGMGDFLDEMLTMMSHTKSNENG
+--EESFEELQ------QLFEDMFQADI--GL----------DGGPSL-------------
+----ASSDSSTSSA------------------YMTYSESSS---------SNKRNSS-EM
+NFGK---AENSSVFDASY------QNFCFG-TG--EPTPRYKEG--------KGGNSRRR
+R---------------------------------------
+>gnl_Glyma1.01_PACid_16266210
+---MANE-------------------------------------------------GKKS
+NNFYSILGLSKECTELELKNAYRKLAKKWHPDRCSATG---NLELVEEAKKKFQEIREAY
+S------VLSDANKRLMYDVGVYDS--------DDDENGMGDFLDEMLTMMSHTKSNENG
+--EESFEELQ------QLFEDMFQADI--GL----------DGGPSL-------------
+----ASSDSSTSSA------------------YMTYSESSS---------SNKRNSS-EM
+NFGK---AENSSVFDASY------QNFCFG-VG--HVNYHYQ------------------
+----------------------------------------
+>gnl_Glyma1.01_PACid_16301083
+---MADE-------------------------------------------------GNKS
+NNFYSILGLKKECTELELKNAYRKLAKKWHPDRCSATG---NSELVEEAKKKFQEIREAY
+S------VLSDANKRLMYDVGVYDS--------DDDENGMGDFLDEMLTMMSQTKSNENG
+--EESFEELQ------QLFEDMFEADI--GL----------DGGPSL-------------
+----ASSDCSTSSA------------------YMTYSESSS---------SNKHNSS-EM
+NFGK---AENSSVFDAGY------QNFCFG-VN--QLQDIKKKK---GGIL-GGGRSRHR
+NGRKQNMSY-GHDVSSNDYPGISTK---------------
+>gnl_Glyma1.01_PACid_16301085
+---MADE-------------------------------------------------GNKS
+NNFYSILGLKKECTELELKNAYRKLAKKWHPDRCSATG---NSELVEEAKKKFQEIREAY
+S------VLSDANKRLMYDVGVYDS--------DDDENGMGDFLDEMLTMMSQTKSNENG
+--EESFEELQ------QLFEDMFEADI--GL----------DGGPSL-------------
+----ASSDCSTSSA------------------YMTYSESSS---------SNKHNSS-EM
+NFGK---AENSSVFDAGY------QNFCFG-VG--HVNYHYQ------------------
+----------------------------------------
+>gnl_Glyma1.01_PACid_16301084
+---MADE-------------------------------------------------GNKS
+NNFYSILGLKKECTELELKNAYRKLAKKWHPDRCSATG---NSELVEEAKKKFQEIREAY
+S------VLSDANKRLMYDVGVYDS--------DDDENGMGDFLDEMLTMMSQTKSNENG
+--EESFEELQ------QLFEDMFEADI--GL----------DGGPSL-------------
+----ASSDCSTSSA------------------YMTYSESSS---------SNKHNSS-EM
+NFGK---AENSSVFDAGY------QNFCFG-TG--EPTPRYKEE--------KGGNSRRR
+----------------------------------------
+>gnl_Medtr3.5_Medtr8g022310.1
+---MANE-------------------------------------------------GNKS
+NDFYAVLGLNKECSDSELRNAYKKLALKWHPDRCSASG---NVKFVEEAKKKFQAIQEAY
+S------VLSDSNKRLMYDVGVYDS--------DDDENGMGDFLNEMVTMMSQTKSNENG
+--EESFEELQ------QLFDDMFQADI--GL----------NGSTSL-------------
+----NASGCSTSST------------------FMTFSESSN---------SNKRNST-QM
+NFGK---AEDSSSFGANY------QNFCFG-MK--HLQEDVEKE--KGGILEGGGSKKQR
+KGRKQKISC-GH-VSSNDHPGISAN---------------
+>gnl_Medtr3.5_Medtr8g022310.2
+---MANE-------------------------------------------------GNKS
+NDFYAVLGLNKECSDSELRNAYKKLALKWHPDRCSASG---NVKFVEEAKKKFQAIQEAY
+S------VLSDSNKRLMYDVGVYDS--------DDDENGMGDFLNEMVTMMSQTKSNENG
+--EESFEELQ------QLFDDMFQADI--GL----------NGSTSL-------------
+----NASGCSTSST------------------FMTFSESSN---------SNKRNST-QM
+NFGK---AEDSSSFGANY------QNFCFG-VN--LVNYHYQ------------------
+----------------------------------------
+>gnl_Musac1.0_GSMUA_Achr6T31040_001
+---MAAE-------------------------------------------------EDKS
+GDFYAVLGLRKECSETELRNAYKKLAMRWHPDKCLASG---NAQIVGEAKEKFQEIQKAY
+S------VLSDSNKRFLYDVGVYDND------DDNDENGMGDFIGEMLEMMSQTKPNENS
+--QDSFQELQ------ELFVEMFQDDL--DAG---------FGGSIFH-DCPWAQP----
+---TNGQDCWTSSG------------------LHFANGRSK--------CGNKRGNS-AV
+NLGK----VNLEELEHGT------SDFYFG-LN--DAAQPSQGKGGS--------NNKRR
+NGRKQKVSS-NHDVSS------------------------
+>gnl_Musac1.0_GSMUA_Achr9T18140_001
+---MAAG-------------------------------------------------EEKI
+GDFYTVLGLRKECSEAELRIAYKKLAMRWHPDKCSASG---NHRRMEEAKEKFQEIQKAY
+S------VLSDSSKRFLYDVGIYDNE------DDNDEKGMGDFIGEIAQMMSQTKSGENG
+--HDSFEELQ------RMFLDMFQDDL--DAG---------FGDSSIH-SGPQARP----
+---TDGLNCSMPSG------------------LQFADGGNN--------GSNKRGNS-EK
+--------AKLDGLENSS------TGFCFG-LN--DAGQSSKGKGSA--------NSKRR
+NGRKQKVSS-KHDVSSSD-AEVSF----------------
+>gnl_Musac1.0_GSMUA_Achr8T23700_001
+---MASD-------------------------------------------------MDAS
+GDFYSVLGLKKECSEAELRNAYKKLALKWHPDKCSASG---NEIRMKEAKQQFQEIQKAY
+S------VLSDSNKRFLYDVGAYDKD------DDKDEEGMVEFLGEMAQMMRQTKCCGSG
+--QESFEQLQ------QMFVEMFHDDL--DAG---------F------------------
+--------CGHSSA---------------------TSGAAS--------CGNKRDNS-AM
+DSGK----RKPDELDPAA------IGFCLG-TK--DAGQSSKGRGS---------NSKRR
+NRRKQKASS-KHDNSSHN-AKVSA----------------
+>gnl_Musac1.0_GSMUA_AchrUn_randomT02210_001
+---MEGD-------------------------------------------------EEKS
+GDFYAVLGLKKEGSMAELKNAYKKLAMKWHPDKCPASG---NKIRMDKAKEKFQEIQKAY
+S------VLSDSNKRFLYDVGVYDKD------DEEDEEGMGDFIGEIAQMMSQSKPSGSG
+--HESLEELH------RQVVEMFLDEL--DAGD-------RFSSANQ-------------
+----GASSCDGRDD----------------------------------GGGNKRGNW-AV
+DWGK----EKLNELGPGT------GGFCFG-VS------------------------RRV
+HSFDLMIDV-VHLIHSDL-------------------TLE
+>gnl_Orysa6.0_PACid_16843526
+---MADGG-------------------------------------EKC-RDAAG-EGGGG
+GDLYAVLGLKKECSDADLKLAYRKLAMRWHPDKCSSSS---SAKHMEEAKEKFQEIQGAY
+S------VLSDSNKRFLYDVGVYDDDD----NDDDNLQGMGDFIGEMAQMMSQARPTR--
+--QESFKELQ------QLFVDMFQADL--DSG---------FCNGPSKCYHTQAQSQTRT
+SSTSPSMSPSPPPP------------------VATEAESPS------CNGINKRGSS-AM
+DSGK-PPRASEVGSGQSQ------SGFCFG-KS--DAKQAAKTRSGNT-------ASRRR
+NGRKQKVSS-KHDVSSEDEMPGSQW-----------HGVA
+>gnl_Orysa6.0_PACid_16843528
+---MADGG-------------------------------------EKC-RDAAG-EGGGG
+GDLYAVLGLKKECSDADLKLAYRKLAMRWHPDKCSSSS---SAKHMEEAKEKFQEIQGAY
+S------VLSDSNKRFLYDVGVYDDDD----NDDDNLQGMGDFIGEMAQMMSQARPTR--
+--QESFKELQ------QLFVDMFQADL--DSG---------FCNGPSKCYHTQAQSQTRT
+SSTSPSMSPSPPPP------------------VATEAESPS------CNGINKRGSS-AM
+DSGK-PPRASEVGSGQSQ------SGFCFGQKS--DAKQAAKTRSGNT-------ASRRR
+NGRKQKVSS-KHDVSSEDEMPGSQW-----------HGVA
+>gnl_Poptr2.2_PACid_18217800
+---MANGGE----------------------------------------------DKWKS
+NDLYQVLGLNKECTDTELRSAYKKLALRWHPDRCSASG---NSKFVEEAKKKFQAIQQAY
+S------VLSDTNKRFLYDVGVDDS--------DDDENGMGDFLNEMAVMMSQTKPSENM
+--EESLEELQ------ELFDEMFQEDL--HS----------FGIDSQ-------------
+----AAPSC--PPS------------------YVSYSESSN--------SNNKRVSA-DM
+NLGK-TKVDDSSSFNSHF------EKFCLG-T-----------GGTAATFQEGEGGSKRR
+NSRRSQRQT-KARQETKSFFGL------------------
+>gnl_Poptr2.2_PACid_18234651
+---MENGGE----------------------------------------------EKGKS
+NDFYQVLGLNKDCTATELRNAYKKLALKWHPDRCSASE---NSRFVDEAKKKFQTIQQAY
+S------VLSDTNKRFLYDVGVYDS--------EDDENGMGGFMNEMAAMMSQTKPHENV
+--EESFEELQ------GLFEEMFQEDL--DS----------FGIACQ-------------
+----ATT-------------------------CVSYSESSN--------SNDKRVSV-DM
+NLKK-TKVDDSSGFNSHV------EKFCLG-V-----------SGTPAIFQEGE-GSKRR
+SSRRNRR---------------------------------
+>gnl_Poptr2.2_PACid_18234649
+MLRMENGGE----------------------------------------------EKGKS
+NDFYQVLGLNKDCTATELRNAYKKLALKWHPDRCSASE---NSRFVDEAKKKFQTIQQAY
+S------VLSDTNKRFLYDVGVYDS--------EDDENGMGGFMNEMAAMMSQTKPHENV
+--EESFEELQ------GLFEEMFQEDL--DS----------FGIACQ-------------
+----ATT-------------------------CVSYSESSN--------SNDKRVSV-DM
+NLKK-TKVDDSSGFNSHV------EKFCLG-VE--HQQSFKKGKGVRGGVQGGT-GGRER
+KGRKQEVSS-GYDVSSHD-HGISAS---------------
+>gnl_Poptr2.2_PACid_18234650
+---MENGGE----------------------------------------------EKGKS
+NDFYQVLGLNKDCTATELRNAYKKLALKWHPDRCSASE---NSRFVDEAKKKFQTIQQAY
+S------VLSDTNKRFLYDVGVYDS--------EDDENGMGGFMNEMAAMMSQTKPHENV
+--EESFEELQ------GLFEEMFQEDL--DS----------FGIACQ-------------
+----ATT-------------------------CVSYSESSN--------SNDKRVSV-DM
+NLKK-TKVDDSSGFNSHV------EKFCLG-VE--HQQSFKKGKGVRGGVQGGT-GGRER
+KGRKQEVSS-GYDVSSHD-HGISAS---------------
+>gnl_Soltu3.4_PGSC0003DMP400016105
+---M-------------------------------------------------------G
+NDYYAVLGLKKECTETELRNAYKKLALKWHPDRCSASG---NSKFVDEAKKKFQAIQEAY
+S------VLSDANKRFLYDVGVYDSG------DDDDENGMGDFLNEMAAMMSQNKSNENQ
+--EETFEELQ------DMFDEIFNSDN--GM------------SSSS-------------
+----SSSSRTGTPS------------------MCSTTSSTSSSET-FFTFSNKRSSG-EM
+KSGK--------GDSCQF------QGFCEG-T-----------GGASGKSNERE-RSRRK
+NSKSGRKQ--------------------------------
+>gnl_Soltu3.4_PGSC0003DMP400016106
+---M-------------------------------------------------------G
+NDYYAVLGLKKECTETELRNAYKKLALKWHPDRCSASG---NSKFVDEAKKKFQAIQEAY
+S------VLSDANKRFLYDVGVYDSG------DDDDENGMGDFLNEMAAMMSQNKSNENQ
+--EETFEELQ------DMFDEIFNSDN--GM------------SSSS-------------
+----SSSSRTGTPS------------------MCSTTSSTSSSET-FFTFSNKRSSG-EM
+KSGK--------GDSCQF------QGFCEG-VE--HLEKAMKENGVGGKIPRVD-GSNRM
+DAKRQKVLS-------------------------------
+>gnl_Ambtr1.0.27_AmTr_v1.0_scaffold00007.329
+---MAPR-------------------------------------------------GEKD
+SDFYAILGLKKECSASDLRNAYKRLALRWHPDRCSASG---NTKFVEECKKKFQAIQQAY
+S------VLSDANKRFLYDVGAYGS--------DDDDQGMGEFLGEMAVMMSQTKPSEKG
+--PESFEDLQ------NLFQEMFERDL--DM----------FKSSTSH------------
+----NNNNDNNNNN------------------HRSSDNNNCSSVH-CFSNTNKRNCS-DM
+NAGE-ASEVGRFAFSCYATEFLHKQTFSVG-AD------DVRSES----------SNKRR
+NGRKQKSTS-SSRKS-------------------------
+>gnl_Aquco1.0_PACid_18141277
+---MAS--------------------------------------------------EEEA
+SDFYKVLGLKNNCSSLELRNAYKKLALKWHPDRCAASG---NSKFVEEAKKNFQAIQEAY
+S------VLSDEQKRFMYDVGVYDKD------DDDENEDMGDFLGEMMSMMKQENTSADG
+--QQSFEDLQ------NLFQEMVQNDK--EF----------YNPASQ-------------
+----NSSIYNASNNMFSFSNNENLNNASNNTFSSFYNENLN--------SSNKKSCS-SM
+SAEN--TKVDFNMESLDF------RSFSIG-LE--GGTSFQNSKGRG--------VTGRR
+TGRKQKGSS-CNDMSSHD-SKILA----------------
+>gnl_Arath10_AT3G14200.1
+---MASSN-----------------------------------------------SEKIN
+ENLYAVLGLKKECSKTELRSAYKKLALRWHPDRCSS------MEFVEEAKKKFQAIQEAY
+S------VLSDSNKRFLYDVGAYNTD------DDDDQNGMGDFLNEMATMMNQSKPSDNN
+-TGDSFEQLQ------DLFNEMFQGDA--AA----------FPSS---------------
+------SSCSTSNF------------------TSSRSFVFD--------TNSQRSSSFAT
+SSMG--MNNDPFGYDPRA------HSFSLG-VD--HQQEFKKGKN----------NGGRR
+NRRKNNVPSAGHETSSSNNYGVPTS---------------
+>gnl_Bradi1.2_Bradi3g60090.1
+---MATGG-------------------------------------DKCGGKPAA-AGVGG
+GDLYSVLGVNKECSDADLKVAYRKLAMRWHPDRCSSSS---STKHMEEAKEKFQEIQGAY
+S------VLSDANKRFLYDVGVYEEHEE---EDDDTLQGMGDFLGEMAHMMSQTQPAR--
+--QESFEELQ------QLFVDMFQSDI--ESG---------FCNGPAK-DHDPVQRQTRT
+FSTPPSPSPSPPPP------------------LATVDEAAS------CNGINKRGSS-AM
+GSGK-PPRAGEVSGGHGQ------SEFCFG-MS--DAKQAPKARGGN--------ASRRR
+NGQKQKLSS-KHDVSSGDEMPRP-------------HAAV
+>gnl_Carpa1.181_PACid_16420351
+---MADG------------------------------------------------EDKNN
+SDLYAVLGLNKECTPAELRNAYKKLAMRWHPDRCSASG---NSMFVEEAKKKFQAIQEAY
+S------VLSDANKRFLYDVGAYES--------DDDENGMGDFLNEMAAMMSQTKPNENG
+NAQESFEELQ------ELFQEMFQGDMGFNT----------FGSSSQP------------
+----TTSSCSASSA------------------YATCSETSN-------PNNNKRNSS-EM
+NYGK-KKVDDSSGFHAHF------QTFCLG-VE--QQQDFKKGKEARGGIRGKP-GGSRR
+QGRKQKVSS-RHNVSSND-LGISAS---------------
+>gnl_Frave2.0_gene05408
+---MAGGKWVPPPLSQFHLHIKRFRRRQKVSGSSGNTEPSGYTDCKNISNR---RMEEKG
+NDFYAVMGLKKECSDSELRNAYKKLALIWHPDRCSASG---NSKFVEEAKKKFQDIQQAY
+S------VLSDANKRFLYDVGAYES--------DDDENGMGDFLNEMAVMMSQTKPNENG
+--GESFEQLQ------ELFEEMFQGDI--EG----------FSSCSQP------------
+----PTSCSTSSSS------------------YALYCENST--------PSNKRNSS-AM
+NYGN--ATLDSSGFDAHF------HNFCVG-T-----------GGKPAKDREGD-ARKRK
+DSRRSNR---------------------------------
+>gnl_Mimgu1.0_PACid_17694730
+---MAAD-------------------------------------------------EEKS
+SDFYGVLGLRKECTAAELRVAYKKLAMKWHPDRCSASG---NLKYVEEAKNKFQAVQQAY
+S------VLSDANKRFLYDVGIYDSE------DDADENGMGDFLNEMVAMMGQSKPNENK
+--NESFQELQ------DLFEEIFNNDA--EEV---------FKIPPPH------------
+--FPYQDSCSETRT-----------------------------------ASNKRNAR-EM
+GSVN-----FSNIEATPF------EGFCIG-ENVIFGGERIQTRPG---------GGSRR
+T--KPKIST-SID-----------------------GLIS
+>gnl_Nelnu1.0_NNU_010544-RA
+------------------------------------------------------------
+---------------------MNLLLQKWHPDRCSSSG---NSKFVEDSKKKFQAIQEAY
+S------VLSDENKRFLYDVGVYDCDD-----DDDDENGMGEFLGEMATMMSQIKPSENG
+--PESLEKLQ------ELFEEMFQRDM--DDG---------FFSPSPQCA----------
+---SFSSSCSSSSS---------------STTYFSYNNNKH---------DNKRNCS-DI
+SSMD--DFYTFGTDSIQF------SNFCIG-VE--GGE-DSKVRGGK---------SRRK
+SNRRQKVSSSKHDPSCR-----------------------
+>gnl_Solly2.3_Solyc03g123560.2.1
+---M----------------------------------------------------EDKS
+NDYYAVLGLKKECTDTELRNAYKKLALKWHPDRCSASG---NLKFVDEAKKQFQAIQEAY
+S------VLSDANKKFLYDVGVYDSG------DDDDENGMGDFLNEMAAMMSQNKSNENQ
+-GEETFEELQ------DMFNEMFNSDN--GT----------FSSSSS-------------
+----SSSSWTGTPS------------------MCSTTSSTSSSET-FLTFPNKRSSG-EM
+KSGS-----SVRGDSCQF------QGFCVG-A-----------GGTSGKCNERE-RSWRK
+NSKSGRKH--------------------------------
+>gnl_Sorbi1.4_PACid_1968370
+---MDAGG-------------------------------------EKFSDAAAAEGGEGG
+GDLYAVLGLKKECSDADLKVAYRKLAKKWHPDKCSSSS---SVKHMEEAKEKFQEIQGAY
+S------VLSDANKRLLYDVGVYDDED-----DEDSMQGMGDFIGEMAQMMSQVRPTR--
+--QESFEELQ------QLFVDMFQSDI--DSG---------FCNGSAK-DQVQGQAKSRT
+CSTSPSSSPSPPPP----------------PTIVKEAEVSS------CNGFNKRGSS-AM
+DSGK-PPRP--VEGGAGQ------AGFCFG-VS--DTKQTPKPRGPN--------TSRRR
+NGRKQKLSS-KHDVSSEDETAGS-----------------
+>gnl_Thepa2.0_Tp3g12470
+---MASNN-----------------------------------------------SEKGN
+DDLYGVLGLKKECTTTELRTAYKKLALRWHPDRCSSMG---TPEFVDEAKKKFQAIQEAY
+S------VLSDSNKRFLYDVGAYNS-------DDEDQNGMGDFLNEMAAMMNQSKPSENN
+-SGDSFEQLQ------DLFNEMFQGDA--AA----------FSSSSS-------------
+------SSCSASTF------------------TSSCSFVFD--------TNSQRSPF-ET
+SSMG---TNDLFGFDHSA------HTFSLG-VE--HQQDFKKGKN----------SGGRR
+NRRKNNAQSAAHETASSNNYGVPTS---------------
+>gnl_Theca1.0_Tc06_g010450
+---MANG-------------------------------------------------EEKN
+NDFYAVLGLNKECTPTELRTAYKKLALRWHPDRCSASG---NSKFVEEAKKKFQAIQQAY
+S------VLSDSNKRFLYDVGAYDS--------DDDENGMGDFLNEMAGMMSQTKSNENG
+--GESFEELQ------ELFEEMFQADI--DS----------FESTGQ-------------
+----STPSCSASSS------------------FGSYGESSS---------SNKRNSS-EM
+SSVE-TRLESSSSFDAQF------HSFCLG-VE--HRQDIKQHRGARGGMRGAAGGSRRR
+NGRKQKVSS-GHDVTSND-CGISAS---------------
+>gnl_Vitvi12X_PACid_17827068
+---MAAG-------------------------------------------------EEKS
+NDFYAVLGLKKECTASELRNAYKRLALMWHPDRCSSSG---NSKFVEEAKKKFQAIQEAY
+S------VLSDANKRFLYDVGAYDS--------DDDENGMGDFLNEMAVMMSQTKSNENG
+--KESFEELQ------ELFEDMFQRDV--DA----------FNSASHH------------
+----PMNSFPSSTS------------------TSSYCESSN--------ANNKRNSA-EM
+GSGRMMSAGESSAFDAHF------QSFCFG-T-----------GGTPGRFQEGE-RSKRR
+NSRRSQR---------------------------------
+>gnl_Selmo1.0_PACid_15401289
+---M----------------------------------------------------EKRK
+EDPYTVLGVQKSSSSSEIRSAYRKLAMKWHPDK--------QHSLEDQAKAKFQGIQEAY
+S------VLSDDKKRVLYDSGLYDEG------DDE-------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------VS---------------------------
+----------------------------------------
+>gnl_Orysa6.0_PACid_16864430
+---MARGGG-----------------------------------G----------GGGAD
+ADLYAVLGLSRECTDADLRLAYRKLAMIWHPDRCSVAGGSASAAGVDEAKERFQEIQGAY
+S------VLSDSNKRFLYDVGVYDGNDGDDDDDEADLSGMGDFLGEMAQMMSQATP----
+--AESFEELQ------QLFVDMFQDDI--DAG---------LCQSTP-------------
+----PPPSWPSPPA-------------------AANARSPAAAAT-SRKGVNKRCSP-AA
+MDMD-----SGLSSLLGI------SGFCFE-AP--WTSQDASTAAGGG-------GGKRR
+KQRPPPA---SHNV--------------------------
+>gnl_Sorbi1.4_PACid_1982925
+---MAATSH-----------------------------------CGNIQDQDEEASAPGA
+ADLYAVLGLNRECTDAELRVAYRRLAMIWHPDRCSASG--SSPARMEEAKERFQEIQGAY
+S------VLSDSNKRLLYDVGVYDSDD-----DEADLSGMGDFLGEMADMMSQATP----
+--TETFEELQ------QVFVDMFQDDLD-DAG---------FFGGLPT-TGRRAQA--PS
+TSLPPSVSSSPLRP----------------TPAAGRSKGPQATPSSSFKGVERRGST-ST
+AKRPRPNGSAGLESDLGL------SGFCFM-VS--KEMSKSKERQAV---WASD-DGDRS
+TDGKQRLST-SRDVSGGG-MSRSLQGQSSKNLLQCMASKS
+>gnl_Medtr3.5_Medtr8g022310.3
+---MANE-------------------------------------------------GNKS
+NDFYAVLGLNKECSDSELRNAYKKLALKWHPDRCSASG---NVKFVEEAKKKFQAIQEAY
+S------VLSDSNKRLMYDVGVYDS--------DDDENVRHLF-----------------
+---HTIHELG------TLFCVMFCFFISLR------------GE----------------
+---------KRSNL------------------NLTFSLSH--------------------
+------------------------------------------------------------
+----------------------------------------
+>gnl_Nelnu1.0_NNU_000115-RA
+---MEVD------------------------------------------------SHRSS
+PSYYTILGVDQNSSASEIRNAYRKLAMQWHPDKWTKTP-----SLLEKAKSKFQQIQEAY
+SGGLLVFMLSDQGKRTLYDVGLYDPDD-----ETNDEVGLRRF--HAGDDISHERC----
+--EETGEEIQLGGTTGDVSGNVTRAGV--EDGECWWCVVVRWSCSLKE------------
+----------------------------------------------------------EL
+KEGQ--------------------MGIISE-SD--DA-----------------------
+----------GHDTPSLPHLHGSEL-----ELLGRTGCCN
+>contig_7
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------ENEWSGAEFLNEMAAMMTQNKSNENG
+--TGTFEELQ------QLFDEMFQSDI--ES----------FNGCSSS------------
+----SNETCS---------------------------------------NSNKRNSI-ES
+SSAN----------------FRPENGNESG-----------------------E-ISGKK
+NTRKGKGDX-------------------------------
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/3722.fna	Mon Oct 30 08:56:01 2017 -0400
@@ -0,0 +1,378 @@
+>gnl_Glyma1.01_PACid_16266208
+ATGGCTAATGAAGGAAAGAAAAGCAATAACTTCTATTCGATCTTGGGCTTGAGCAAGGAGTGCACTGAATTGGAGCTAAA
+GAATGCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCCACCGGGAATTTAGAGTTAGTGGAAGAAG
+CTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTATTCTGTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTGGGA
+GTCTACGACAGTGATGACGACGAAAACGGCATGGGGGACTTCTTGGACGAAATGTTAACAATGATGAGTCATACCAAATC
+AAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCAACAGCTTTTTGAAGACATGTTTCAAGCGGATATTGGATTGGATG
+GAGGCCCTTCTCTTGCTTCTTCTGATTCCTCAACTTCATCTGCTTACATGACTTACAGTGAAAGTTCTAGTTCAAATAAA
+CGCAATTCCTCTGAGATGAATTTCGGGAAGGCAGAGAATTCTTCTGTCTTTGATGCCAGTTACCAGAATTTCTGTTTTGG
+GGTGAACCAACTCCAAGATATAAAGAAGGGAAAGGGGGGAATTCTAGGAGGAGGAGGTAGAAGTAGACACAGAAGTGGCA
+GAAAGCAAAAAATGTTCTATGGCCATGATGTT
+>gnl_Glyma1.01_PACid_16266209
+ATGGCTAATGAAGGAAAGAAAAGCAATAACTTCTATTCGATCTTGGGCTTGAGCAAGGAGTGCACTGAATTGGAGCTAAA
+GAATGCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCCACCGGGAATTTAGAGTTAGTGGAAGAAG
+CTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTATTCTGTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTGGGA
+GTCTACGACAGTGATGACGACGAAAACGGCATGGGGGACTTCTTGGACGAAATGTTAACAATGATGAGTCATACCAAATC
+AAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCAACAGCTTTTTGAAGACATGTTTCAAGCGGATATTGGATTGGATG
+GAGGCCCTTCTCTTGCTTCTTCTGATTCCTCAACTTCATCTGCTTACATGACTTACAGTGAAAGTTCTAGTTCAAATAAA
+CGCAATTCCTCTGAGATGAATTTCGGGAAGGCAGAGAATTCTTCTGTCTTTGATGCCAGTTACCAGAATTTCTGTTTTGG
+GACAGGTGAACCAACTCCAAGATATAAAGAAGGGAAAGGGGGGAATTCTAGGAGGAGGAGG
+>gnl_Glyma1.01_PACid_16266210
+ATGGCTAATGAAGGAAAGAAAAGCAATAACTTCTATTCGATCTTGGGCTTGAGCAAGGAGTGCACTGAATTGGAGCTAAA
+GAATGCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCCACCGGGAATTTAGAGTTAGTGGAAGAAG
+CTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTATTCTGTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTGGGA
+GTCTACGACAGTGATGACGACGAAAACGGCATGGGGGACTTCTTGGACGAAATGTTAACAATGATGAGTCATACCAAATC
+AAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCAACAGCTTTTTGAAGACATGTTTCAAGCGGATATTGGATTGGATG
+GAGGCCCTTCTCTTGCTTCTTCTGATTCCTCAACTTCATCTGCTTACATGACTTACAGTGAAAGTTCTAGTTCAAATAAA
+CGCAATTCCTCTGAGATGAATTTCGGGAAGGCAGAGAATTCTTCTGTCTTTGATGCCAGTTACCAGAATTTCTGTTTTGG
+GGTCGGTCATGTAAACTATCATTACCAA
+>gnl_Glyma1.01_PACid_16301083
+ATGGCCGATGAAGGAAACAAAAGCAATAACTTCTATTCGATCTTGGGGTTGAAGAAGGAGTGCACTGAATTGGAGCTAAA
+GAATGCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCGACCGGGAATTCAGAGTTAGTGGAAGAAG
+CTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTATTCAGTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTGGGA
+GTCTACGACAGTGATGACGACGAGAACGGCATGGGGGACTTCTTGGACGAAATGCTAACAATGATGAGTCAGACCAAATC
+GAATGAAAACGGAGAGGAGAGCTTTGAGGAGTTGCAACAGTTGTTTGAAGACATGTTTGAAGCAGATATTGGATTGGACG
+GAGGCCCTTCTCTTGCTTCTTCTGATTGCTCAACTTCATCTGCTTACATGACTTATAGTGAAAGTTCTAGTTCAAATAAA
+CACAATTCCTCTGAGATGAATTTCGGGAAGGCAGAGAATTCTTCTGTCTTTGATGCTGGTTACCAGAATTTCTGTTTTGG
+GGTGAACCAACTCCAAGATATAAAGAAGAAAAAGGGGGGAATTCTAGGAGGAGGTAGAAGTAGACACAGAAATGGCAGAA
+AGCAAAATATGTCCTATGGCCATGATGTTTCATCGAATGACTACCCTGGAATTTCCACAAAG
+>gnl_Glyma1.01_PACid_16301085
+ATGGCCGATGAAGGAAACAAAAGCAATAACTTCTATTCGATCTTGGGGTTGAAGAAGGAGTGCACTGAATTGGAGCTAAA
+GAATGCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCGACCGGGAATTCAGAGTTAGTGGAAGAAG
+CTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTATTCAGTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTGGGA
+GTCTACGACAGTGATGACGACGAGAACGGCATGGGGGACTTCTTGGACGAAATGCTAACAATGATGAGTCAGACCAAATC
+GAATGAAAACGGAGAGGAGAGCTTTGAGGAGTTGCAACAGTTGTTTGAAGACATGTTTGAAGCAGATATTGGATTGGACG
+GAGGCCCTTCTCTTGCTTCTTCTGATTGCTCAACTTCATCTGCTTACATGACTTATAGTGAAAGTTCTAGTTCAAATAAA
+CACAATTCCTCTGAGATGAATTTCGGGAAGGCAGAGAATTCTTCTGTCTTTGATGCTGGTTACCAGAATTTCTGTTTTGG
+GGTAGGTCATGTAAACTATCATTACCAA
+>gnl_Glyma1.01_PACid_16301084
+ATGGCCGATGAAGGAAACAAAAGCAATAACTTCTATTCGATCTTGGGGTTGAAGAAGGAGTGCACTGAATTGGAGCTAAA
+GAATGCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCGACCGGGAATTCAGAGTTAGTGGAAGAAG
+CTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTATTCAGTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTGGGA
+GTCTACGACAGTGATGACGACGAGAACGGCATGGGGGACTTCTTGGACGAAATGCTAACAATGATGAGTCAGACCAAATC
+GAATGAAAACGGAGAGGAGAGCTTTGAGGAGTTGCAACAGTTGTTTGAAGACATGTTTGAAGCAGATATTGGATTGGACG
+GAGGCCCTTCTCTTGCTTCTTCTGATTGCTCAACTTCATCTGCTTACATGACTTATAGTGAAAGTTCTAGTTCAAATAAA
+CACAATTCCTCTGAGATGAATTTCGGGAAGGCAGAGAATTCTTCTGTCTTTGATGCTGGTTACCAGAATTTCTGTTTTGG
+GACAGGTGAACCAACTCCAAGATATAAAGAAGAAAAAGGGGGGAATTCTAGGAGGAGG
+>gnl_Medtr3.5_Medtr8g022310.1
+ATGGCTAACGAAGGAAACAAAAGCAATGATTTCTATGCAGTTTTGGGATTGAATAAGGAATGCTCTGATTCAGAGCTAAG
+GAATGCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGTTGTTCAGCTTCAGGGAATGTGAAGTTTGTGGAAGAAG
+CTAAGAAGAAATTTCAGGCAATTCAAGAAGCCTATTCTGTTTTATCTGACTCGAACAAGAGATTAATGTACGACGTTGGA
+GTTTACGACAGTGATGATGACGAAAATGGTATGGGAGACTTTCTGAATGAAATGGTTACAATGATGAGCCAAACTAAATC
+AAATGAAAATGGAGAGGAGAGCTTCGAGGAGTTACAACAGTTGTTTGATGATATGTTTCAAGCGGATATCGGATTAAATG
+GAAGCACCTCTCTTAATGCTTCGGGTTGCTCCACTTCATCGACTTTCATGACGTTCAGTGAAAGCTCGAATTCAAATAAG
+CGCAATTCCACTCAAATGAATTTTGGGAAGGCAGAGGATTCTTCTAGTTTTGGTGCAAATTACCAGAACTTCTGTTTTGG
+GATGAAGCACCTTCAAGAAGATGTGGAGAAGGAAAAAGGGGGAATTCTAGAAGGAGGAGGTAGCAAAAAACAAAGAAAAG
+GAAGAAAACAAAAAATTTCATGTGGACATGTTTCCTCTAATGACCATCCTGGTATTTCTGCTAAT
+>gnl_Medtr3.5_Medtr8g022310.2
+ATGGCTAACGAAGGAAACAAAAGCAATGATTTCTATGCAGTTTTGGGATTGAATAAGGAATGCTCTGATTCAGAGCTAAG
+GAATGCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGTTGTTCAGCTTCAGGGAATGTGAAGTTTGTGGAAGAAG
+CTAAGAAGAAATTTCAGGCAATTCAAGAAGCCTATTCTGTTTTATCTGACTCGAACAAGAGATTAATGTACGACGTTGGA
+GTTTACGACAGTGATGATGACGAAAATGGTATGGGAGACTTTCTGAATGAAATGGTTACAATGATGAGCCAAACTAAATC
+AAATGAAAATGGAGAGGAGAGCTTCGAGGAGTTACAACAGTTGTTTGATGATATGTTTCAAGCGGATATCGGATTAAATG
+GAAGCACCTCTCTTAATGCTTCGGGTTGCTCCACTTCATCGACTTTCATGACGTTCAGTGAAAGCTCGAATTCAAATAAG
+CGCAATTCCACTCAAATGAATTTTGGGAAGGCAGAGGATTCTTCTAGTTTTGGTGCAAATTACCAGAACTTCTGTTTTGG
+GGTCAATCTTGTAAATTATCATTACCAA
+>gnl_Musac1.0_GSMUA_Achr6T31040_001
+ATGGCGGCCGAAGAGGACAAAAGCGGCGACTTCTACGCCGTGTTGGGGCTCAGGAAGGAGTGCTCCGAAACCGAGCTGAG
+GAATGCGTACAAGAAGCTTGCCATGAGGTGGCATCCGGATAAGTGCTTGGCTTCGGGAAATGCTCAAATCGTGGGGGAAG
+CCAAGGAGAAGTTTCAGGAGATCCAGAAAGCCTACTCTGTTCTCTCAGACTCCAATAAGAGATTCCTGTACGATGTGGGA
+GTCTACGACAACGATGATGACAATGACGAAAACGGTATGGGAGACTTTATAGGGGAGATGTTGGAGATGATGAGCCAAAC
+GAAACCCAATGAGAACAGCCAAGATAGCTTCCAGGAGCTGCAGGAGCTGTTTGTGGAGATGTTCCAGGACGACCTGGATG
+CCGGATTTGGTGGTTCCATCTTCCACGATTGCCCCTGGGCTCAACCGACCAATGGCCAAGATTGCTGGACTTCATCGGGA
+CTGCACTTTGCTAATGGAAGGAGTAAGTGTGGCAACAAGCGGGGCAACTCAGCTGTGAACTTGGGAAAGGTCAATCTTGA
+AGAGTTGGAACATGGTACCAGCGACTTCTATTTTGGGCTAAATGATGCAGCACAGCCATCACAAGGGAAAGGAGGCAGTA
+ATAACAAGAGAAGGAATGGAAGAAAGCAAAAGGTTTCATCCAATCATGATGTCTCATCC
+>gnl_Musac1.0_GSMUA_Achr9T18140_001
+ATGGCCGCCGGGGAGGAAAAGATCGGCGATTTCTACACGGTGCTGGGGCTCAGGAAGGAGTGCTCGGAGGCGGAGCTGAG
+GATCGCGTACAAGAAGCTGGCTATGAGATGGCATCCGGATAAGTGCTCGGCTTCGGGAAACCATCGAAGGATGGAGGAAG
+CGAAGGAGAAGTTCCAGGAAATCCAAAAAGCCTACTCTGTTCTCTCGGACTCCAGCAAGAGATTTCTGTATGATGTGGGA
+ATCTACGATAACGAGGATGATAATGACGAAAAAGGAATGGGGGATTTTATTGGGGAGATAGCTCAGATGATGAGCCAAAC
+GAAATCTGGGGAGAATGGTCATGATAGCTTTGAGGAGCTGCAGCGGATGTTCCTGGATATGTTCCAGGACGACCTGGACG
+CCGGATTCGGTGATTCTTCCATCCACAGTGGCCCCCAAGCTCGGCCAACCGACGGTCTCAATTGCTCGATGCCATCAGGA
+CTGCAGTTTGCTGATGGAGGGAACAATGGCAGCAACAAGAGAGGCAACTCGGAGAAGGCAAAGCTGGATGGGTTGGAAAA
+CAGTTCCACTGGCTTCTGCTTCGGGTTGAATGATGCAGGGCAGTCATCAAAAGGAAAAGGAAGCGCTAATAGCAAGAGAA
+GGAATGGAAGAAAGCAGAAGGTCTCATCCAAACATGATGTCTCATCCAGTGATGCTGAGGTCTCATTT
+>gnl_Musac1.0_GSMUA_Achr8T23700_001
+ATGGCGAGCGACATGGATGCAAGCGGCGATTTCTACTCGGTGCTGGGGCTGAAGAAGGAGTGCTCCGAGGCGGAGCTCAG
+GAATGCGTACAAGAAGCTCGCTTTGAAGTGGCATCCCGATAAGTGCTCGGCGTCGGGTAATGAGATTCGCATGAAGGAAG
+CGAAGCAGCAGTTCCAGGAGATCCAGAAAGCCTACTCTGTTCTCTCCGACTCCAACAAGAGATTTCTGTACGATGTTGGA
+GCCTACGACAAAGACGACGACAAAGACGAAGAGGGGATGGTGGAGTTTCTTGGGGAGATGGCGCAAATGATGAGGCAAAC
+CAAATGCTGTGGGAGCGGCCAGGAGAGCTTCGAGCAGCTGCAGCAGATGTTCGTGGAGATGTTCCACGACGATCTGGACG
+CGGGATTCTGCGGCCACTCCTCGGCCACCTCGGGCGCGGCGTCCTGCGGCAACAAACGGGACAACTCGGCGATGGACTCG
+GGCAAGCGGAAGCCGGACGAGTTGGACCCGGCCGCCATTGGGTTCTGCCTCGGGACAAAGGATGCAGGGCAATCCTCAAA
+AGGAAGAGGTAGCAACAGCAAGAGAAGGAACAGAAGAAAGCAAAAGGCATCATCCAAGCATGACAACTCATCTCACAATG
+CTAAGGTCTCAGCT
+>gnl_Musac1.0_GSMUA_AchrUn_randomT02210_001
+ATGGAGGGGGACGAGGAGAAGAGCGGGGATTTCTACGCGGTGCTGGGGCTGAAGAAAGAGGGCTCCATGGCGGAGCTCAA
+GAATGCGTACAAGAAGCTGGCGATGAAGTGGCATCCCGATAAGTGTCCTGCGTCAGGCAATAAGATACGCATGGATAAAG
+CGAAGGAGAAGTTCCAGGAGATCCAAAAAGCCTACTCTGTTCTCTCCGACTCCAACAAGCGATTCCTGTACGATGTCGGA
+GTTTACGACAAAGACGATGAGGAAGATGAAGAGGGGATGGGGGACTTCATTGGGGAGATCGCGCAAATGATGAGCCAGTC
+CAAACCCAGCGGGAGCGGCCACGAGAGCTTGGAGGAGCTGCATCGGCAGGTCGTGGAGATGTTCCTCGACGAACTGGACG
+CCGGAGATCGCTTCTCCTCGGCCAACCAAGGCGCGTCGTCCTGCGACGGCAGGGACGACGGCGGCGGTAACAAGCGTGGC
+AACTGGGCGGTGGACTGGGGCAAGGAGAAGCTGAACGAGTTGGGCCCGGGCACCGGCGGGTTCTGCTTCGGGGTGAGTCG
+CCGAGTCCACTCCTTTGATCTTATGATAGACGTAGTCCACCTCATCCATTCTGATCTGACTCTGGAA
+>gnl_Orysa6.0_PACid_16843526
+ATGGCCGACGGGGGAGAGAAGTGCCGGGACGCGGCCGGCGAGGGCGGCGGCGGCGGCGACCTGTACGCCGTGCTCGGGCT
+CAAGAAGGAGTGCTCCGACGCCGACCTCAAGCTCGCGTACCGGAAGCTCGCCATGAGATGGCATCCGGACAAATGCTCAT
+CCTCCAGCAGTGCAAAGCACATGGAGGAAGCCAAGGAGAAGTTCCAGGAGATCCAGGGCGCCTATTCCGTCCTCTCAGAC
+TCAAACAAGCGGTTCCTCTACGACGTGGGGGTATATGATGATGACGACAATGACGATGACAACCTGCAGGGGATGGGGGA
+CTTCATTGGTGAGATGGCCCAGATGATGAGCCAGGCACGGCCAACGAGGCAGGAGAGCTTTAAAGAACTGCAGCAGCTAT
+TCGTAGACATGTTCCAAGCTGATCTTGATTCGGGTTTCTGCAATGGACCCTCAAAGTGCTACCATACCCAGGCCCAAAGC
+CAGACTCGAACATCCTCAACCTCCCCTTCGATGTCACCGTCTCCACCGCCTCCAGTAGCTACTGAGGCAGAATCGCCATC
+ATGTAATGGTATTAATAAGCGTGGTTCATCAGCAATGGACTCTGGGAAGCCTCCAAGAGCCAGCGAAGTCGGTTCTGGAC
+AGAGTCAATCAGGGTTTTGTTTCGGGAAGAGTGATGCTAAACAAGCGGCGAAGACGCGAAGCGGGAACACGGCCAGCCGG
+AGGAGGAACGGCCGGAAGCAGAAGGTGTCGTCGAAGCACGACGTCTCGTCTGAGGACGAGATGCCAGGTTCGCAGTGGCA
+CGGCGTGGCC
+>gnl_Orysa6.0_PACid_16843528
+ATGGCCGACGGGGGAGAGAAGTGCCGGGACGCGGCCGGCGAGGGCGGCGGCGGCGGCGACCTGTACGCCGTGCTCGGGCT
+CAAGAAGGAGTGCTCCGACGCCGACCTCAAGCTCGCGTACCGGAAGCTCGCCATGAGATGGCATCCGGACAAATGCTCAT
+CCTCCAGCAGTGCAAAGCACATGGAGGAAGCCAAGGAGAAGTTCCAGGAGATCCAGGGCGCCTATTCCGTCCTCTCAGAC
+TCAAACAAGCGGTTCCTCTACGACGTGGGGGTATATGATGATGACGACAATGACGATGACAACCTGCAGGGGATGGGGGA
+CTTCATTGGTGAGATGGCCCAGATGATGAGCCAGGCACGGCCAACGAGGCAGGAGAGCTTTAAAGAACTGCAGCAGCTAT
+TCGTAGACATGTTCCAAGCTGATCTTGATTCGGGTTTCTGCAATGGACCCTCAAAGTGCTACCATACCCAGGCCCAAAGC
+CAGACTCGAACATCCTCAACCTCCCCTTCGATGTCACCGTCTCCACCGCCTCCAGTAGCTACTGAGGCAGAATCGCCATC
+ATGTAATGGTATTAATAAGCGTGGTTCATCAGCAATGGACTCTGGGAAGCCTCCAAGAGCCAGCGAAGTCGGTTCTGGAC
+AGAGTCAATCAGGGTTTTGTTTCGGGCAGAAGAGTGATGCTAAACAAGCGGCGAAGACGCGAAGCGGGAACACGGCCAGC
+CGGAGGAGGAACGGCCGGAAGCAGAAGGTGTCGTCGAAGCACGACGTCTCGTCTGAGGACGAGATGCCAGGTTCGCAGTG
+GCACGGCGTGGCC
+>gnl_Poptr2.2_PACid_18217800
+ATGGCAAACGGAGGAGAAGATAAATGGAAAAGCAATGACTTATATCAAGTCTTGGGGTTGAATAAGGAATGCACTGATAC
+AGAGCTCAGGAGTGCTTATAAGAAACTTGCACTGAGATGGCATCCAGATCGATGTTCAGCTTCAGGAAATTCTAAGTTCG
+TTGAAGAAGCCAAAAAGAAGTTTCAGGCAATTCAACAGGCCTATTCTGTTCTTTCTGACACCAACAAGAGGTTTCTTTAC
+GACGTTGGTGTTGATGACAGTGATGACGACGAAAATGGAATGGGTGATTTTCTGAATGAAATGGCTGTCATGATGAGCCA
+AACGAAGCCTAGCGAAAACATGGAGGAGAGCCTAGAGGAACTGCAAGAATTATTTGACGAGATGTTCCAAGAGGATCTGC
+ATTCGTTTGGGATTGACAGTCAGGCTGCTCCTTCATGTCCTCCTTCTTATGTATCCTACAGCGAAAGTTCCAACTCAAAT
+AACAAACGTGTTTCTGCTGATATGAACTTGGGGAAGACTAAAGTGGATGATTCTTCTAGCTTCAACTCTCACTTTGAGAA
+ATTCTGTTTAGGGACAGGTGGAACAGCAGCAACCTTTCAAGAAGGTGAAGGTGGGAGTAAGAGGAGGAATTCAAGGAGGA
+GCCAGCGGCAGACGAAGGCAAGACAAGAAACAAAGAGTTTCTTCGGGCTA
+>gnl_Poptr2.2_PACid_18234651
+ATGGAAAATGGAGGAGAAGAGAAAGGGAAAAGCAATGACTTTTATCAGGTTTTGGGGTTGAATAAGGATTGCACTGCCAC
+AGAGCTGAGGAATGCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGATGTTCAGCTTCGGAAAATTCCAGGTTCG
+TTGACGAAGCCAAAAAGAAGTTTCAGACAATTCAACAGGCCTATTCTGTTCTTTCTGACACCAACAAGAGGTTTCTTTAC
+GACGTTGGTGTTTATGACAGTGAAGACGACGAAAATGGAATGGGCGGATTTATGAATGAAATGGCTGCTATGATGAGCCA
+AACAAAGCCCCACGAAAACGTGGAGGAGAGCTTTGAGGAATTGCAAGGATTGTTTGAGGAGATGTTCCAAGAGGATTTGG
+ATTCGTTTGGGATTGCCTGTCAGGCTACTACCTGTGTGTCATACAGCGAAAGCTCCAACTCAAATGATAAACGTGTTTCT
+GTCGATATGAACTTGAAGAAGACAAAGGTGGATGATTCTTCTGGCTTCAATTCTCACGTCGAGAAGTTCTGTTTAGGGGT
+AAGTGGAACACCAGCAATCTTTCAAGAAGGGGAAGGGAGTAAGAGGAGGAGTTCAAGGAGGAACCGGCGG
+>gnl_Poptr2.2_PACid_18234649
+ATGCTAAGAATGGAAAATGGAGGAGAAGAGAAAGGGAAAAGCAATGACTTTTATCAGGTTTTGGGGTTGAATAAGGATTG
+CACTGCCACAGAGCTGAGGAATGCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGATGTTCAGCTTCGGAAAATT
+CCAGGTTCGTTGACGAAGCCAAAAAGAAGTTTCAGACAATTCAACAGGCCTATTCTGTTCTTTCTGACACCAACAAGAGG
+TTTCTTTACGACGTTGGTGTTTATGACAGTGAAGACGACGAAAATGGAATGGGCGGATTTATGAATGAAATGGCTGCTAT
+GATGAGCCAAACAAAGCCCCACGAAAACGTGGAGGAGAGCTTTGAGGAATTGCAAGGATTGTTTGAGGAGATGTTCCAAG
+AGGATTTGGATTCGTTTGGGATTGCCTGTCAGGCTACTACCTGTGTGTCATACAGCGAAAGCTCCAACTCAAATGATAAA
+CGTGTTTCTGTCGATATGAACTTGAAGAAGACAAAGGTGGATGATTCTTCTGGCTTCAATTCTCACGTCGAGAAGTTCTG
+TTTAGGGGTGGAACACCAGCAATCTTTCAAGAAGGGGAAGGGAGTAAGAGGAGGAGTTCAAGGAGGAACCGGCGGTAGAG
+AGAGGAAAGGCAGGAAACAAGAAGTTTCATCTGGCTATGATGTCTCCTCCCATGACCATGGTATTTCTGCTTCA
+>gnl_Poptr2.2_PACid_18234650
+ATGGAAAATGGAGGAGAAGAGAAAGGGAAAAGCAATGACTTTTATCAGGTTTTGGGGTTGAATAAGGATTGCACTGCCAC
+AGAGCTGAGGAATGCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGATGTTCAGCTTCGGAAAATTCCAGGTTCG
+TTGACGAAGCCAAAAAGAAGTTTCAGACAATTCAACAGGCCTATTCTGTTCTTTCTGACACCAACAAGAGGTTTCTTTAC
+GACGTTGGTGTTTATGACAGTGAAGACGACGAAAATGGAATGGGCGGATTTATGAATGAAATGGCTGCTATGATGAGCCA
+AACAAAGCCCCACGAAAACGTGGAGGAGAGCTTTGAGGAATTGCAAGGATTGTTTGAGGAGATGTTCCAAGAGGATTTGG
+ATTCGTTTGGGATTGCCTGTCAGGCTACTACCTGTGTGTCATACAGCGAAAGCTCCAACTCAAATGATAAACGTGTTTCT
+GTCGATATGAACTTGAAGAAGACAAAGGTGGATGATTCTTCTGGCTTCAATTCTCACGTCGAGAAGTTCTGTTTAGGGGT
+GGAACACCAGCAATCTTTCAAGAAGGGGAAGGGAGTAAGAGGAGGAGTTCAAGGAGGAACCGGCGGTAGAGAGAGGAAAG
+GCAGGAAACAAGAAGTTTCATCTGGCTATGATGTCTCCTCCCATGACCATGGTATTTCTGCTTCA
+>gnl_Soltu3.4_PGSC0003DMP400016105
+ATGGGCAATGATTATTATGCAGTTTTGGGATTGAAAAAGGAATGCACTGAAACAGAGCTTAGGAATGCTTATAAGAAGCT
+TGCACTGAAATGGCACCCAGATCGCTGTTCAGCATCGGGGAATTCGAAGTTTGTAGATGAAGCAAAGAAGAAATTTCAGG
+CAATTCAAGAAGCATATTCTGTGTTATCGGATGCAAACAAAAGGTTTCTGTACGATGTAGGAGTTTATGACTCTGGTGAT
+GATGACGACGAAAATGGCATGGGTGATTTCCTGAATGAAATGGCAGCTATGATGAGCCAAAATAAGTCCAATGAAAATCA
+GGAAGAAACCTTTGAGGAATTGCAGGATATGTTTGACGAAATTTTCAATAGTGATAATGGGATGTCTTCTTCTTCTTCTT
+CTTCTTCTCGGACTGGAACTCCTTCAATGTGTTCTACTACATCGTCTACATCTTCCAGTGAGACCTTTTTTACCTTTTCC
+AACAAAAGAAGTTCAGGTGAAATGAAGTCGGGTAAAGGCGATTCTTGCCAATTCCAAGGATTTTGTGAAGGGACAGGTGG
+AGCATCTGGAAAAAGCAATGAAAGAGAACGGAGTCGGAGGAAAAATTCCAAGAGTGGACGGAAGCAA
+>gnl_Soltu3.4_PGSC0003DMP400016106
+ATGGGCAATGATTATTATGCAGTTTTGGGATTGAAAAAGGAATGCACTGAAACAGAGCTTAGGAATGCTTATAAGAAGCT
+TGCACTGAAATGGCACCCAGATCGCTGTTCAGCATCGGGGAATTCGAAGTTTGTAGATGAAGCAAAGAAGAAATTTCAGG
+CAATTCAAGAAGCATATTCTGTGTTATCGGATGCAAACAAAAGGTTTCTGTACGATGTAGGAGTTTATGACTCTGGTGAT
+GATGACGACGAAAATGGCATGGGTGATTTCCTGAATGAAATGGCAGCTATGATGAGCCAAAATAAGTCCAATGAAAATCA
+GGAAGAAACCTTTGAGGAATTGCAGGATATGTTTGACGAAATTTTCAATAGTGATAATGGGATGTCTTCTTCTTCTTCTT
+CTTCTTCTCGGACTGGAACTCCTTCAATGTGTTCTACTACATCGTCTACATCTTCCAGTGAGACCTTTTTTACCTTTTCC
+AACAAAAGAAGTTCAGGTGAAATGAAGTCGGGTAAAGGCGATTCTTGCCAATTCCAAGGATTTTGTGAAGGGGTGGAGCA
+TCTGGAAAAAGCAATGAAAGAGAACGGAGTCGGAGGAAAAATTCCAAGAGTGGACGGAAGCAATAGGATGGATGCTAAAA
+GGCAAAAGGTTCTATCA
+>gnl_Ambtr1.0.27_AmTr_v1.0_scaffold00007.329
+ATGGCACCCCGAGGAGAGAAAGACAGTGATTTTTATGCAATTTTAGGGTTGAAGAAGGAGTGCTCTGCTTCAGATCTCAG
+AAATGCGTACAAAAGGCTCGCACTTCGGTGGCATCCAGATAGGTGCTCTGCCTCAGGGAACACAAAGTTTGTGGAGGAAT
+GCAAGAAAAAGTTCCAGGCCATTCAGCAGGCTTATTCCGTGCTCTCGGATGCAAATAAGAGGTTTTTGTACGATGTTGGA
+GCATATGGAAGTGACGATGACGATCAGGGAATGGGTGAATTTCTTGGGGAGATGGCGGTAATGATGAGCCAGACAAAGCC
+CAGTGAAAAAGGGCCGGAGAGCTTTGAGGATCTACAGAACTTGTTTCAGGAGATGTTCGAAAGGGATCTGGACATGTTTA
+AGTCATCGACCTCCCACAACAACAACAATGATAACAACAATAATAATCATAGGAGTAGTGACAATAATAATTGTAGTAGT
+GTTCATTGTTTTAGTAACACCAACAAGAGGAATTGCTCGGATATGAATGCCGGAGAAGCCTCGGAGGTCGGGCGCTTTGC
+TTTCTCATGCTATGCGACAGAGTTCCTGCACAAGCAAACTTTCTCCGTCGGGGCGGATGATGTGCGATCGGAGTCGAGCA
+ACAAGAGACGAAACGGGAGGAAACAGAAATCCACCTCCTCTTCAAGGAAAAGT
+>gnl_Aquco1.0_PACid_18141277
+ATGGCTAGTGAAGAAGAAGCAAGTGATTTCTATAAAGTTTTGGGATTGAAAAATAACTGTTCTTCCTTGGAGCTCAGGAA
+CGCTTATAAGAAGCTTGCACTGAAATGGCATCCGGATCGTTGTGCTGCTTCAGGAAACTCAAAGTTTGTTGAAGAAGCAA
+AGAAGAATTTTCAAGCAATACAAGAAGCTTATTCTGTTCTTTCAGATGAGCAGAAACGATTTATGTATGACGTTGGTGTC
+TACGATAAAGATGATGATGACGAAAATGAAGATATGGGCGATTTTTTAGGTGAAATGATGTCTATGATGAAGCAAGAAAA
+TACTAGTGCGGATGGACAACAAAGTTTTGAAGACCTTCAAAACCTATTCCAGGAAATGGTTCAAAATGACAAAGAATTTT
+ATAATCCAGCCTCTCAAAACTCGTCGATATATAATGCTAGTAACAACATGTTCTCCTTCTCTAATAACGAGAACTTAAAC
+AATGCTAGCAACAACACATTCTCCTCTTTTTATAATGAGAACCTAAACAGCAGCAACAAGAAAAGTTGCTCAAGTATGAG
+CGCAGAAAATACCAAGGTGGACTTTAACATGGAATCATTGGACTTCCGCAGCTTTTCTATTGGGTTAGAAGGCGGTACAT
+CATTTCAAAACTCCAAAGGGAGAGGAGTAACGGGTAGGCGGACAGGAAGGAAACAGAAGGGGTCGTCCTGTAATGATATG
+TCTTCCCATGATTCTAAGATTTTGGCG
+>gnl_Arath10_AT3G14200.1
+ATGGCGTCCAGTAATAGCGAGAAGATCAACGAGAATCTGTACGCTGTTCTGGGTTTGAAGAAGGAATGTTCTAAGACGGA
+GCTCCGTTCTGCTTATAAGAAGCTTGCTCTCAGATGGCATCCAGATCGTTGTTCGTCAATGGAGTTTGTAGAAGAAGCAA
+AGAAGAAATTTCAGGCAATCCAAGAAGCCTACTCTGTTCTGTCTGACTCCAACAAGAGGTTCCTGTATGATGTTGGTGCT
+TATAATACTGATGATGATGATGACCAAAACGGAATGGGAGATTTCTTGAACGAAATGGCGACTATGATGAATCAATCCAA
+GCCTAGTGATAATAACACAGGGGACAGTTTTGAACAACTACAAGATCTGTTTAATGAGATGTTTCAAGGAGACGCTGCAG
+CATTCCCATCATCATCGTCCTGCTCCACTTCAAATTTCACTTCATCTCGTAGTTTTGTATTCGATACAAATTCTCAGCGG
+TCATCTTCGTTTGCGACAAGTTCGATGGGGATGAATAATGATCCTTTCGGATATGACCCGAGAGCTCATTCCTTCTCTTT
+AGGGGTGGACCATCAGCAAGAGTTCAAGAAAGGGAAAAACAATGGCGGAAGAAGAAACAGGAGAAAGAACAATGTTCCAT
+CGGCTGGTCACGAAACGTCGTCGTCAAACAACTATGGAGTCCCCACCTCA
+>gnl_Bradi1.2_Bradi3g60090.1
+ATGGCCACCGGGGGCGACAAGTGCGGCGGAAAGCCGGCGGCCGCGGGGGTGGGCGGCGGTGACCTGTACTCTGTGCTGGG
+CGTCAACAAGGAGTGCTCCGACGCCGACCTCAAGGTCGCCTACCGGAAGCTCGCCATGAGATGGCATCCGGATAGATGCT
+CCTCCTCCAGCAGCACCAAGCACATGGAGGAAGCAAAAGAGAAGTTCCAGGAGATCCAGGGCGCCTATTCCGTCCTCTCC
+GATGCCAACAAGCGCTTCCTCTATGACGTGGGGGTATATGAAGAACATGAAGAAGAAGATGATGACACTCTGCAGGGGAT
+GGGGGACTTCCTTGGTGAGATGGCCCATATGATGAGCCAGACGCAGCCAGCGAGACAGGAAAGCTTTGAGGAGCTCCAGC
+AGCTCTTCGTGGACATGTTCCAGTCTGATATTGAATCGGGATTCTGCAACGGACCTGCCAAGGACCATGACCCAGTCCAA
+AGACAGACGCGAACATTCTCGACCCCTCCTTCGCCATCGCCATCTCCACCGCCTCCACTAGCTACAGTGGACGAAGCGGC
+ATCATGTAATGGCATCAATAAGCGTGGCTCATCAGCAATGGGCTCTGGGAAGCCTCCAAGAGCTGGTGAAGTGAGTGGGG
+GTCACGGCCAGTCTGAGTTCTGTTTCGGGATGAGCGACGCCAAGCAAGCGCCGAAGGCGCGAGGCGGGAACGCTAGCAGG
+AGAAGGAACGGCCAGAAGCAGAAACTGTCGTCGAAGCACGACGTCTCCTCCGGCGATGAGATGCCGAGACCACATGCAGC
+AGTA
+>gnl_Carpa1.181_PACid_16420351
+ATGGCGGATGGAGAAGACAAGAACAACAGTGATTTGTATGCGGTTCTTGGATTGAATAAGGAATGTACTCCAGCAGAGCT
+CAGGAACGCTTATAAGAAACTTGCAATGAGATGGCATCCAGATCGCTGTTCCGCGTCGGGGAATTCAATGTTTGTGGAAG
+AAGCAAAGAAGAAATTTCAGGCAATCCAAGAAGCCTACTCTGTTCTTTCTGACGCAAACAAGAGGTTTCTGTACGACGTC
+GGAGCTTACGAAAGTGATGACGACGAAAATGGAATGGGTGATTTTTTAAACGAAATGGCAGCCATGATGAGCCAAACAAA
+GCCTAATGAGAATGGGAATGCACAAGAGAGCTTTGAAGAATTGCAAGAGTTGTTTCAAGAGATGTTTCAAGGGGATATGG
+GATTCAACACATTTGGATCTAGTTCTCAGCCTACTACTTCTTCGTGTTCTGCTTCCTCTGCATATGCAACCTGTAGCGAA
+ACCTCCAATCCTAACAACAACAAGCGCAATTCATCAGAAATGAATTATGGCAAGAAAAAGGTAGATGATTCTTCAGGGTT
+TCATGCTCATTTCCAAACCTTTTGTTTAGGGGTGGAACAGCAGCAAGATTTCAAGAAGGGGAAGGAAGCAAGAGGAGGAA
+TTCGAGGAAAACCCGGAGGTAGTAGGAGGCAGGGAAGGAAACAGAAGGTTTCATCTCGCCACAATGTCTCATCCAATGAC
+TTGGGCATTTCTGCTTCC
+>gnl_Frave2.0_gene05408
+ATGGCGGGGGGAAAGTGGGTCCCCCCACCCCTGTCCCAGTTTCATCTTCACATAAAGAGGTTCCGTCGACGTCAGAAAGT
+CTCTGGATCCAGTGGAAACACAGAACCTTCTGGATACACAGACTGCAAAAATATCTCCAATCGAAGAATGGAAGAGAAAG
+GCAATGACTTTTATGCTGTTATGGGGTTGAAGAAGGAATGCTCTGACTCGGAGCTCAGGAATGCTTATAAGAAACTTGCA
+CTGATATGGCACCCAGATCGTTGCTCTGCCTCAGGAAATTCAAAGTTCGTGGAAGAAGCCAAGAAGAAGTTTCAGGACAT
+TCAACAAGCCTATTCTGTTCTGTCCGACGCCAACAAGAGGTTTCTGTACGATGTAGGAGCTTATGAAAGTGATGATGACG
+AAAATGGAATGGGTGATTTTTTAAACGAGATGGCGGTGATGATGAGCCAGACTAAGCCGAATGAAAATGGAGGAGAGAGC
+TTCGAACAATTGCAGGAGCTCTTTGAAGAAATGTTTCAGGGGGATATTGAGGGCTTTAGCTCCTGCTCTCAGCCTCCTAC
+TTCCTGTTCTACTTCCTCATCTTCATACGCATTGTACTGTGAAAATTCTACTCCCAGTAACAAACGTAATTCCTCCGCAA
+TGAATTATGGCAACGCAACCCTGGACAGTTCTGGTTTTGATGCTCATTTTCACAATTTCTGTGTAGGGACAGGCGGGAAG
+CCAGCAAAGGATCGGGAAGGGGATGCCAGGAAGAGAAAGGATTCCAGGAGGAGTAACCGG
+>gnl_Mimgu1.0_PACid_17694730
+ATGGCTGCTGATGAAGAGAAAAGCAGCGATTTTTACGGCGTTCTGGGGCTGAGGAAAGAATGTACGGCGGCGGAGCTCAG
+GGTTGCCTACAAGAAACTTGCAATGAAATGGCATCCAGATCGTTGCTCTGCTTCTGGGAATTTAAAGTATGTGGAGGAAG
+CAAAGAACAAGTTTCAAGCTGTCCAACAGGCCTATTCTGTGCTTTCCGATGCCAACAAAAGGTTTCTCTACGACGTAGGA
+ATCTACGATTCTGAAGACGATGCTGACGAAAACGGTATGGGTGATTTCTTGAATGAAATGGTAGCAATGATGGGCCAAAG
+TAAACCAAATGAAAATAAAAACGAGAGCTTCCAAGAATTGCAAGATCTATTCGAGGAAATATTCAACAATGACGCGGAAG
+AGGTTTTCAAGATTCCTCCTCCGCACTTTCCGTACCAAGATTCTTGCAGCGAGACCCGCACCGCATCGAACAAGAGGAAC
+GCCCGCGAAATGGGCTCCGTAAATTTCAGTAATATCGAAGCCACACCATTTGAAGGGTTCTGCATAGGGGAAAATGTAAT
+TTTTGGGGGAGAGAGAATACAAACGAGGCCCGGAGGAGGTAGTAGGAGGACGAAGCCGAAGATTTCGACATCGATCGATG
+GTTTAATTAGT
+>gnl_Nelnu1.0_NNU_010544-RA
+ATGAACCTGTTGTTGCAGAAATGGCATCCGGATCGATGCTCCTCGTCGGGAAACTCTAAGTTCGTGGAAGATTCAAAGAA
+GAAATTTCAGGCAATTCAAGAGGCTTATTCTGTTCTATCCGACGAGAATAAGCGATTTCTTTACGACGTTGGAGTTTACG
+ACTGCGACGACGATGACGATGACGAAAACGGAATGGGAGAATTTTTGGGGGAAATGGCGACTATGATGAGCCAAATTAAA
+CCCAGCGAGAACGGGCCGGAGAGTTTGGAGAAGCTGCAGGAACTGTTCGAGGAAATGTTCCAAAGGGACATGGATGATGG
+TTTCTTCTCCCCCTCCCCCCAATGCGCTTCTTTTTCTTCGTCTTGCTCATCTTCTTCGTCGTCGACGACTTATTTTTCAT
+ATAATAACAACAAGCACGACAATAAAAGGAATTGCTCCGACATCAGTTCTATGGACGATTTCTACACATTTGGCACGGAT
+TCTATACAATTCAGCAATTTCTGCATTGGGGTGGAAGGAGGAGAAGATTCAAAAGTAAGAGGAGGAAAGTCAAGGCGGAA
+GAGCAACAGGAGACAAAAAGTTTCATCGTCTAAACACGATCCGTCGTGCCGT
+>gnl_Solly2.3_Solyc03g123560.2.1
+ATGGAAGACAAAAGCAATGATTATTATGCAGTTTTGGGGTTGAAGAAGGAATGCACTGACACAGAACTTAGGAATGCCTA
+TAAGAAGCTTGCACTGAAATGGCACCCAGATCGCTGTTCAGCATCGGGGAATTTGAAGTTTGTAGATGAAGCAAAGAAGC
+AATTTCAGGCAATTCAAGAAGCATATTCTGTGTTATCGGATGCAAACAAAAAGTTTTTGTACGATGTAGGAGTTTATGAC
+TCTGGTGATGATGACGACGAAAATGGCATGGGTGATTTCCTGAATGAAATGGCAGCTATGATGAGCCAAAATAAGTCCAA
+TGAAAATCAGGGAGAAGAAACCTTTGAGGAATTGCAGGATATGTTTAATGAAATGTTCAACAGTGATAATGGAACGTTTT
+CTTCTTCTTCTTCTTCTTCTTCTTCTTGGACTGGAACTCCTTCAATGTGCTCTACTACATCATCTACATCTTCAAGTGAG
+ACTTTTTTAACCTTTCCCAACAAGAGAAGTTCAGGTGAAATGAAGTCGGGTAGTAGTGTAAGAGGCGATTCTTGCCAATT
+CCAAGGATTTTGTGTAGGGGCAGGTGGAACTTCTGGAAAATGCAATGAAAGAGAACGAAGTTGGAGGAAAAATTCCAAGA
+GTGGACGGAAGCAT
+>gnl_Sorbi1.4_PACid_1968370
+ATGGACGCCGGGGGAGAGAAGTTCAGCGACGCGGCGGCGGCGGAGGGCGGTGAGGGCGGCGGCGACCTCTACGCCGTCCT
+CGGGCTCAAGAAGGAGTGCTCCGACGCCGACCTCAAGGTCGCTTACCGGAAGCTCGCCAAGAAATGGCACCCGGACAAAT
+GCTCCTCCTCCAGCAGCGTGAAACACATGGAGGAAGCCAAGGAGAAGTTCCAAGAGATCCAGGGCGCCTATTCCGTACTC
+TCTGACGCCAATAAACGGCTCCTCTACGATGTTGGAGTATACGACGATGAGGACGACGAGGATAGCATGCAGGGGATGGG
+TGACTTCATTGGTGAGATGGCCCAGATGATGAGCCAGGTGCGGCCGACGAGGCAGGAAAGCTTTGAGGAGCTGCAGCAGC
+TTTTTGTGGACATGTTCCAGTCTGATATTGATTCAGGATTCTGCAACGGGTCTGCTAAGGATCAAGTTCAGGGGCAAGCC
+AAAAGTAGAACATGCTCGACCTCACCTTCATCATCACCGTCCCCACCTCCTCCTCCTACTATAGTAAAGGAGGCAGAGGT
+GTCATCATGTAATGGCTTCAATAAGCGGGGTTCATCAGCAATGGACTCAGGGAAGCCTCCAAGGCCTGTTGAAGGCGGTG
+CTGGTCAGGCTGGATTTTGTTTTGGGGTGAGCGATACGAAGCAAACGCCGAAGCCGAGAGGTCCGAACACCAGCCGGAGG
+AGGAACGGCCGGAAACAGAAGCTGTCATCCAAGCACGATGTTTCATCTGAAGATGAAACGGCCGGTTCC
+>gnl_Thepa2.0_Tp3g12470
+ATGGCGTCGAACAATAGCGAGAAAGGAAACGATGATTTGTATGGTGTTCTGGGCTTGAAGAAGGAATGTACGACGACGGA
+GCTCCGTACTGCTTATAAGAAGCTTGCTCTAAGATGGCATCCAGATCGTTGTTCGTCAATGGGGACTCCAGAGTTTGTAG
+ACGAAGCAAAGAAGAAGTTTCAGGCAATCCAAGAGGCCTATTCTGTTCTGTCTGACTCCAACAAGAGGTTCCTCTATGAT
+GTTGGAGCTTATAACAGTGATGATGAAGACCAAAACGGTATGGGAGATTTCTTGAACGAAATGGCGGCAATGATGAATCA
+GTCCAAGCCTAGTGAGAATAACTCAGGGGACAGTTTTGAGCAGCTACAAGATCTGTTTAATGAGATGTTTCAAGGAGACG
+CTGCAGCATTCTCATCATCATCATCATCATCTTGCTCTGCTTCGACTTTTACTTCCTCTTGTAGCTTTGTCTTTGACACA
+AATAGTCAGCGGTCACCGTTTGAGACAAGCTCAATGGGGACTAATGATCTTTTTGGATTCGATCACAGTGCTCACACCTT
+CTCTTTAGGGGTGGAACATCAGCAGGATTTCAAGAAGGGGAAGAACAGTGGTGGAAGAAGAAACAGAAGGAAGAACAATG
+CTCAATCGGCTGCTCACGAGACGGCGTCGTCCAACAACTATGGAGTCCCCACTTCA
+>gnl_Theca1.0_Tc06_g010450
+ATGGCAAATGGAGAAGAGAAAAACAATGATTTTTATGCAGTTTTGGGGTTGAATAAAGAATGCACTCCGACAGAGCTCAG
+GACTGCTTATAAGAAACTTGCCCTGAGATGGCACCCTGATCGTTGCTCAGCTTCGGGAAATTCAAAGTTCGTGGAAGAAG
+CCAAGAAGAAATTTCAGGCCATTCAACAAGCCTATTCTGTTCTGTCTGACTCAAACAAGAGGTTTCTGTACGACGTAGGA
+GCTTATGACAGTGATGATGACGAAAATGGAATGGGAGATTTTTTGAACGAAATGGCAGGGATGATGAGCCAGACAAAATC
+TAATGAAAATGGAGGGGAAAGCTTCGAGGAACTACAGGAATTGTTTGAAGAAATGTTCCAAGCGGACATTGATTCATTTG
+AGTCTACTGGTCAGTCCACTCCTTCCTGCTCTGCTTCATCTTCGTTTGGGTCATATGGTGAAAGTTCCAGCTCCAACAAG
+CGGAATTCCTCTGAAATGAGTTCTGTGGAGACTAGGCTGGAGAGTTCTTCTAGCTTCGATGCACAATTTCACAGTTTTTG
+TCTCGGGGTGGAACACAGGCAAGATATCAAGCAACACAGAGGAGCCAGAGGAGGAATGCGAGGAGCAGCCGGCGGTAGTA
+GACGGAGAAATGGCAGGAAACAAAAGGTTTCATCTGGCCATGATGTTACTTCCAACGACTGTGGCATTTCTGCTTCA
+>gnl_Vitvi12X_PACid_17827068
+ATGGCCGCCGGAGAAGAGAAGAGCAATGATTTTTATGCCGTTCTAGGGTTGAAAAAGGAATGCACCGCCTCCGAGCTCAG
+AAATGCGTACAAGAGACTTGCCCTGATGTGGCACCCAGATCGTTGCTCCTCGTCGGGAAACTCGAAATTCGTGGAAGAAG
+CGAAGAAGAAATTTCAGGCCATACAAGAAGCCTATTCAGTTCTCTCTGATGCGAATAAAAGGTTTCTGTACGACGTTGGA
+GCCTACGACAGCGATGATGACGAAAACGGAATGGGGGATTTTTTGAATGAGATGGCGGTTATGATGAGCCAAACCAAGTC
+CAATGAAAATGGGAAGGAGAGCTTTGAGGAGTTGCAGGAGCTCTTTGAGGATATGTTCCAAAGGGATGTCGACGCATTCA
+ACTCTGCCTCTCATCACCCCATGAACTCTTTCCCCAGTTCTACTTCCACTTCTTCCTACTGCGAAAGCTCCAATGCCAAC
+AACAAGCGGAATTCGGCTGAAATGGGCTCTGGAAGGATGATGAGTGCAGGGGAGTCCTCTGCTTTTGATGCCCACTTTCA
+GAGCTTCTGCTTTGGGACAGGCGGCACGCCAGGGAGATTTCAGGAGGGGGAAAGGAGCAAGAGGAGGAATTCCAGGAGGA
+GCCAACGG
+>gnl_Selmo1.0_PACid_15401289
+ATGGAGAAGAGGAAAGAGGATCCCTACACTGTTCTTGGTGTCCAAAAGTCGAGTTCTAGCTCGGAAATTCGCTCCGCTTA
+TCGGAAGCTCGCCATGAAATGGCATCCAGATAAGCAACACTCTTTAGAGGATCAAGCAAAAGCGAAGTTCCAGGGCATTC
+AAGAAGCTTATTCAGTGCTATCCGACGACAAAAAAAGAGTTCTTTATGATTCGGGACTTTATGACGAGGGAGATGACGAG
+GTGAGT
+>gnl_Orysa6.0_PACid_16864430
+ATGGCCCGCGGCGGCGGCGGCGGCGGCGGCGCGGACGCCGACCTGTACGCCGTCCTCGGCCTCAGCAGGGAGTGCACCGA
+CGCCGACCTCAGGCTCGCCTACCGCAAGCTCGCCATGATATGGCATCCGGACAGGTGCTCGGTGGCCGGCGGCAGCGCGA
+GCGCGGCGGGCGTCGACGAGGCCAAGGAGCGATTCCAGGAGATCCAGGGCGCCTACTCCGTGCTCTCCGACTCCAACAAG
+CGCTTCCTCTACGACGTCGGCGTCTACGACGGCAACGACGGCGACGACGACGACGACGAAGCAGATCTGTCGGGGATGGG
+CGATTTCCTCGGCGAGATGGCGCAGATGATGAGCCAGGCGACGCCTGCGGAGAGCTTCGAGGAGTTGCAGCAGCTGTTCG
+TGGACATGTTCCAGGACGACATCGACGCCGGCCTCTGCCAGTCGACGCCGCCGCCGCCGTCATGGCCGTCGCCTCCGGCG
+GCCGCCAATGCACGATCGCCGGCGGCGGCGGCGACTTCACGCAAGGGCGTGAACAAGCGGTGCTCACCGGCGGCGATGGA
+CATGGACTCCGGTTTGAGCAGCCTGCTGGGCATTTCGGGCTTCTGTTTCGAGGCGCCATGGACGTCGCAGGACGCGAGCA
+CTGCCGCCGGCGGTGGCGGCGGCAAGAGGAGAAAGCAGAGGCCGCCGCCGGCGAGCCACAACGTG
+>gnl_Sorbi1.4_PACid_1982925
+ATGGCTGCTACAAGTCACTGCGGCAACATCCAGGACCAGGACGAAGAAGCTTCGGCTCCTGGCGCCGCCGACCTCTACGC
+CGTGCTCGGGCTCAACAGGGAGTGCACCGACGCCGAGCTCAGGGTCGCGTACCGGCGGCTCGCCATGATATGGCATCCGG
+ACAGGTGCTCGGCGTCCGGCAGCTCGCCGGCGCGCATGGAGGAGGCCAAGGAGCGGTTCCAGGAGATCCAGGGCGCCTAC
+TCCGTGCTCTCCGACTCCAACAAGCGGCTCCTCTACGACGTCGGCGTCTACGACAGCGACGACGACGAGGCTGACCTGTC
+GGGGATGGGCGACTTCCTCGGAGAGATGGCCGACATGATGAGCCAGGCCACGCCAACGGAGACCTTCGAGGAGCTGCAGC
+AGGTGTTCGTGGACATGTTCCAGGACGACCTGGACGACGCCGGCTTCTTCGGCGGGCTTCCGACGACGGGCCGCAGGGCC
+CAGGCACCCAGCACCTCGCTGCCGCCGTCGGTGTCGTCGTCGCCGTTGCGGCCGACGCCTGCCGCTGGAAGAAGCAAGGG
+TCCGCAAGCGACGCCGTCGTCGTCGTTTAAAGGCGTCGAGAGGCGGGGTTCGACGTCGACGGCGAAACGGCCGAGGCCCA
+ACGGGTCGGCGGGCCTGGAATCGGACCTGGGCCTCTCCGGATTCTGCTTCATGGTGAGTAAGGAGATGAGCAAGTCGAAG
+GAGAGGCAAGCGGTATGGGCCAGTGACGACGGTGACAGGAGCACCGATGGCAAGCAGAGGTTGTCGACGAGCCGCGATGT
+CTCCGGTGGTGGGATGTCACGCTCACTGCAGGGCCAAAGCAGCAAAAACTTGTTGCAGTGTATGGCCTCTAAGTCT
+>gnl_Medtr3.5_Medtr8g022310.3
+ATGGCTAACGAAGGAAACAAAAGCAATGATTTCTATGCAGTTTTGGGATTGAATAAGGAATGCTCTGATTCAGAGCTAAG
+GAATGCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGTTGTTCAGCTTCAGGGAATGTGAAGTTTGTGGAAGAAG
+CTAAGAAGAAATTTCAGGCAATTCAAGAAGCCTATTCTGTTTTATCTGACTCGAACAAGAGATTAATGTACGACGTTGGA
+GTTTACGACAGTGATGATGACGAAAATGTAAGGCACTTGTTTCACACCATTCATGAGTTGGGGACCCTCTTTTGCGTTAT
+GTTTTGTTTCTTCATTTCCTTGAGGGGAGAGAAGAGAAGCAACCTTAATTTAACCTTTTCACTTTCACAT
+>gnl_Nelnu1.0_NNU_000115-RA
+ATGGAGGTGGACTCCCATCGATCATCTCCATCTTACTACACCATCCTTGGTGTAGATCAGAATTCCTCCGCTTCCGAGAT
+ACGCAATGCTTACAGGAAGCTCGCGATGCAATGGCATCCAGACAAATGGACGAAAACTCCGTCGCTCTTAGAGAAAGCCA
+AGAGTAAATTCCAGCAAATCCAGGAGGCTTATTCGGGTGGGTTACTCGTTTTCATGTTATCGGATCAGGGGAAGAGAACA
+CTGTATGATGTCGGTCTGTATGACCCGGACGATGAAACGAATGACGAGGTGGGGCTTCGCAGATTTCATGCAGGAGATGA
+TATCTCTCATGAACGATGTGAAGAAACAGGAGAAGAAATACAGCTTGGAGGAACTACAGGAGATGTTAGTGGAAATGTCA
+CAAGGGCTGGAGTTGAAGATGGAGAGTGCTGGTGGTGTGTGGTTGTTAGATGGAGCTGCAGCCTCAAGGAGGAGCTCAAA
+GAGGGCCAGATGGGAATCATCAGCGAGTCCGACGACGCTGGACACGACACACCTTCTCTCCCCCACTTGCACGGTTCAGA
+GCTGGAATTGTTAGGAAGAACCGGCTGTTGCAAT
+>contig_7
+GAGAATGAGTGGTCTGGGGCTGAGTTTTTGAATGAAATGGCGGCAATGATGACTCAAAATAAATCCAATGAAAACGGAAC
+CGGAACTTTTGAAGAACTGCAACAATTGTTCGATGAAATGTTTCAGAGCGACATCGAGTCCTTCAATGGTTGTTCTTCAT
+CATCCAATGAAACATGTAGCAACTCGAACAAGAGGAATTCCATTGAGTCGAGCTCGGCTAATTTCAGACCCGAAAATGGA
+AACGAAAGCGGCGAGATTAGCGGGAAGAAGAATACTAGGAAAGGTAAAGGTGACGNN
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/3722.fna.aln	Mon Oct 30 08:56:01 2017 -0400
@@ -0,0 +1,819 @@
+>gnl_Glyma1.01_PACid_16266208
+---------ATGGCTAATGAA---------------------------------------
+------------------------------------------------------------
+------------------------------------------------GGAAAGAAAAGC
+AATAACTTCTATTCGATCTTGGGCTTGAGCAAGGAGTGCACTGAATTGGAGCTAAAGAAT
+GCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCCACCGGG------
+---AATTTAGAGTTAGTGGAAGAAGCTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTAT
+TCT------------------GTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTG
+GGAGTCTACGACAGT------------------------GATGACGACGAAAACGGCATG
+GGGGACTTCTTGGACGAAATGTTAACAATGATGAGTCATACCAAATCAAATGAAAATGGA
+------GAGGAGAGCTTTGAGGAGTTGCAA------------------CAGCTTTTTGAA
+GACATGTTTCAAGCGGATATT------GGATTG---------------------------
+---GATGGAGGCCCTTCTCTT---------------------------------------
+------------GCTTCTTCTGATTCCTCAACTTCATCTGCT------------------
+------------------------------------TACATGACTTACAGTGAAAGTTCT
+AGT---------------------------TCAAATAAACGCAATTCCTCT---GAGATG
+AATTTCGGGAAG---------GCAGAGAATTCTTCTGTCTTTGATGCCAGTTAC------
+------------CAGAATTTCTGTTTTGGG---GTGAAC------CAACTCCAAGATATA
+AAGAAGGGAAAG---------GGGGGAATTCTAGGAGGAGGAGGTAGAAGTAGACACAGA
+AGTGGCAGAAAGCAAAAAATGTTCTAT---GGCCATGATGTT------------------
+------------------------------------------------------------
+>gnl_Glyma1.01_PACid_16266209
+---------ATGGCTAATGAA---------------------------------------
+------------------------------------------------------------
+------------------------------------------------GGAAAGAAAAGC
+AATAACTTCTATTCGATCTTGGGCTTGAGCAAGGAGTGCACTGAATTGGAGCTAAAGAAT
+GCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCCACCGGG------
+---AATTTAGAGTTAGTGGAAGAAGCTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTAT
+TCT------------------GTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTG
+GGAGTCTACGACAGT------------------------GATGACGACGAAAACGGCATG
+GGGGACTTCTTGGACGAAATGTTAACAATGATGAGTCATACCAAATCAAATGAAAATGGA
+------GAGGAGAGCTTTGAGGAGTTGCAA------------------CAGCTTTTTGAA
+GACATGTTTCAAGCGGATATT------GGATTG---------------------------
+---GATGGAGGCCCTTCTCTT---------------------------------------
+------------GCTTCTTCTGATTCCTCAACTTCATCTGCT------------------
+------------------------------------TACATGACTTACAGTGAAAGTTCT
+AGT---------------------------TCAAATAAACGCAATTCCTCT---GAGATG
+AATTTCGGGAAG---------GCAGAGAATTCTTCTGTCTTTGATGCCAGTTAC------
+------------CAGAATTTCTGTTTTGGG---ACAGGT------GAACCAACTCCAAGA
+TATAAAGAAGGG------------------------AAAGGGGGGAATTCTAGGAGGAGG
+AGG---------------------------------------------------------
+------------------------------------------------------------
+>gnl_Glyma1.01_PACid_16266210
+---------ATGGCTAATGAA---------------------------------------
+------------------------------------------------------------
+------------------------------------------------GGAAAGAAAAGC
+AATAACTTCTATTCGATCTTGGGCTTGAGCAAGGAGTGCACTGAATTGGAGCTAAAGAAT
+GCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCCACCGGG------
+---AATTTAGAGTTAGTGGAAGAAGCTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTAT
+TCT------------------GTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTG
+GGAGTCTACGACAGT------------------------GATGACGACGAAAACGGCATG
+GGGGACTTCTTGGACGAAATGTTAACAATGATGAGTCATACCAAATCAAATGAAAATGGA
+------GAGGAGAGCTTTGAGGAGTTGCAA------------------CAGCTTTTTGAA
+GACATGTTTCAAGCGGATATT------GGATTG---------------------------
+---GATGGAGGCCCTTCTCTT---------------------------------------
+------------GCTTCTTCTGATTCCTCAACTTCATCTGCT------------------
+------------------------------------TACATGACTTACAGTGAAAGTTCT
+AGT---------------------------TCAAATAAACGCAATTCCTCT---GAGATG
+AATTTCGGGAAG---------GCAGAGAATTCTTCTGTCTTTGATGCCAGTTAC------
+------------CAGAATTTCTGTTTTGGG---GTCGGT------CATGTAAACTATCAT
+TACCAA------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+>gnl_Glyma1.01_PACid_16301083
+---------ATGGCCGATGAA---------------------------------------
+------------------------------------------------------------
+------------------------------------------------GGAAACAAAAGC
+AATAACTTCTATTCGATCTTGGGGTTGAAGAAGGAGTGCACTGAATTGGAGCTAAAGAAT
+GCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCGACCGGG------
+---AATTCAGAGTTAGTGGAAGAAGCTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTAT
+TCA------------------GTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTG
+GGAGTCTACGACAGT------------------------GATGACGACGAGAACGGCATG
+GGGGACTTCTTGGACGAAATGCTAACAATGATGAGTCAGACCAAATCGAATGAAAACGGA
+------GAGGAGAGCTTTGAGGAGTTGCAA------------------CAGTTGTTTGAA
+GACATGTTTGAAGCAGATATT------GGATTG---------------------------
+---GACGGAGGCCCTTCTCTT---------------------------------------
+------------GCTTCTTCTGATTGCTCAACTTCATCTGCT------------------
+------------------------------------TACATGACTTATAGTGAAAGTTCT
+AGT---------------------------TCAAATAAACACAATTCCTCT---GAGATG
+AATTTCGGGAAG---------GCAGAGAATTCTTCTGTCTTTGATGCTGGTTAC------
+------------CAGAATTTCTGTTTTGGG---GTGAAC------CAACTCCAAGATATA
+AAGAAGAAAAAG---------GGGGGAATTCTA---GGAGGAGGTAGAAGTAGACACAGA
+AATGGCAGAAAGCAAAATATGTCCTAT---GGCCATGATGTTTCATCGAATGACTACCCT
+GGAATTTCCACAAAG---------------------------------------------
+>gnl_Glyma1.01_PACid_16301085
+---------ATGGCCGATGAA---------------------------------------
+------------------------------------------------------------
+------------------------------------------------GGAAACAAAAGC
+AATAACTTCTATTCGATCTTGGGGTTGAAGAAGGAGTGCACTGAATTGGAGCTAAAGAAT
+GCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCGACCGGG------
+---AATTCAGAGTTAGTGGAAGAAGCTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTAT
+TCA------------------GTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTG
+GGAGTCTACGACAGT------------------------GATGACGACGAGAACGGCATG
+GGGGACTTCTTGGACGAAATGCTAACAATGATGAGTCAGACCAAATCGAATGAAAACGGA
+------GAGGAGAGCTTTGAGGAGTTGCAA------------------CAGTTGTTTGAA
+GACATGTTTGAAGCAGATATT------GGATTG---------------------------
+---GACGGAGGCCCTTCTCTT---------------------------------------
+------------GCTTCTTCTGATTGCTCAACTTCATCTGCT------------------
+------------------------------------TACATGACTTATAGTGAAAGTTCT
+AGT---------------------------TCAAATAAACACAATTCCTCT---GAGATG
+AATTTCGGGAAG---------GCAGAGAATTCTTCTGTCTTTGATGCTGGTTAC------
+------------CAGAATTTCTGTTTTGGG---GTAGGT------CATGTAAACTATCAT
+TACCAA------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+>gnl_Glyma1.01_PACid_16301084
+---------ATGGCCGATGAA---------------------------------------
+------------------------------------------------------------
+------------------------------------------------GGAAACAAAAGC
+AATAACTTCTATTCGATCTTGGGGTTGAAGAAGGAGTGCACTGAATTGGAGCTAAAGAAT
+GCTTATAGGAAACTTGCAAAGAAATGGCACCCAGATCGTTGTTCAGCGACCGGG------
+---AATTCAGAGTTAGTGGAAGAAGCTAAGAAAAAATTTCAGGAAATTCGGGAAGCCTAT
+TCA------------------GTTTTATCTGACGCCAACAAAAGGTTAATGTACGACGTG
+GGAGTCTACGACAGT------------------------GATGACGACGAGAACGGCATG
+GGGGACTTCTTGGACGAAATGCTAACAATGATGAGTCAGACCAAATCGAATGAAAACGGA
+------GAGGAGAGCTTTGAGGAGTTGCAA------------------CAGTTGTTTGAA
+GACATGTTTGAAGCAGATATT------GGATTG---------------------------
+---GACGGAGGCCCTTCTCTT---------------------------------------
+------------GCTTCTTCTGATTGCTCAACTTCATCTGCT------------------
+------------------------------------TACATGACTTATAGTGAAAGTTCT
+AGT---------------------------TCAAATAAACACAATTCCTCT---GAGATG
+AATTTCGGGAAG---------GCAGAGAATTCTTCTGTCTTTGATGCTGGTTAC------
+------------CAGAATTTCTGTTTTGGG---ACAGGT------GAACCAACTCCAAGA
+TATAAAGAAGAA------------------------AAAGGGGGGAATTCTAGGAGGAGG
+------------------------------------------------------------
+------------------------------------------------------------
+>gnl_Medtr3.5_Medtr8g022310.1
+---------ATGGCTAACGAA---------------------------------------
+------------------------------------------------------------
+------------------------------------------------GGAAACAAAAGC
+AATGATTTCTATGCAGTTTTGGGATTGAATAAGGAATGCTCTGATTCAGAGCTAAGGAAT
+GCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGTTGTTCAGCTTCAGGG------
+---AATGTGAAGTTTGTGGAAGAAGCTAAGAAGAAATTTCAGGCAATTCAAGAAGCCTAT
+TCT------------------GTTTTATCTGACTCGAACAAGAGATTAATGTACGACGTT
+GGAGTTTACGACAGT------------------------GATGATGACGAAAATGGTATG
+GGAGACTTTCTGAATGAAATGGTTACAATGATGAGCCAAACTAAATCAAATGAAAATGGA
+------GAGGAGAGCTTCGAGGAGTTACAA------------------CAGTTGTTTGAT
+GATATGTTTCAAGCGGATATC------GGATTA---------------------------
+---AATGGAAGCACCTCTCTT---------------------------------------
+------------AATGCTTCGGGTTGCTCCACTTCATCGACT------------------
+------------------------------------TTCATGACGTTCAGTGAAAGCTCG
+AAT---------------------------TCAAATAAGCGCAATTCCACT---CAAATG
+AATTTTGGGAAG---------GCAGAGGATTCTTCTAGTTTTGGTGCAAATTAC------
+------------CAGAACTTCTGTTTTGGG---ATGAAG------CACCTTCAAGAAGAT
+GTGGAGAAGGAA------AAAGGGGGAATTCTAGAAGGAGGAGGTAGCAAAAAACAAAGA
+AAAGGAAGAAAACAAAAAATTTCATGT---GGACAT---GTTTCCTCTAATGACCATCCT
+GGTATTTCTGCTAAT---------------------------------------------
+>gnl_Medtr3.5_Medtr8g022310.2
+---------ATGGCTAACGAA---------------------------------------
+------------------------------------------------------------
+------------------------------------------------GGAAACAAAAGC
+AATGATTTCTATGCAGTTTTGGGATTGAATAAGGAATGCTCTGATTCAGAGCTAAGGAAT
+GCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGTTGTTCAGCTTCAGGG------
+---AATGTGAAGTTTGTGGAAGAAGCTAAGAAGAAATTTCAGGCAATTCAAGAAGCCTAT
+TCT------------------GTTTTATCTGACTCGAACAAGAGATTAATGTACGACGTT
+GGAGTTTACGACAGT------------------------GATGATGACGAAAATGGTATG
+GGAGACTTTCTGAATGAAATGGTTACAATGATGAGCCAAACTAAATCAAATGAAAATGGA
+------GAGGAGAGCTTCGAGGAGTTACAA------------------CAGTTGTTTGAT
+GATATGTTTCAAGCGGATATC------GGATTA---------------------------
+---AATGGAAGCACCTCTCTT---------------------------------------
+------------AATGCTTCGGGTTGCTCCACTTCATCGACT------------------
+------------------------------------TTCATGACGTTCAGTGAAAGCTCG
+AAT---------------------------TCAAATAAGCGCAATTCCACT---CAAATG
+AATTTTGGGAAG---------GCAGAGGATTCTTCTAGTTTTGGTGCAAATTAC------
+------------CAGAACTTCTGTTTTGGG---GTCAAT------CTTGTAAATTATCAT
+TACCAA------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+>gnl_Musac1.0_GSMUA_Achr6T31040_001
+---------ATGGCGGCCGAA---------------------------------------
+------------------------------------------------------------
+------------------------------------------------GAGGACAAAAGC
+GGCGACTTCTACGCCGTGTTGGGGCTCAGGAAGGAGTGCTCCGAAACCGAGCTGAGGAAT
+GCGTACAAGAAGCTTGCCATGAGGTGGCATCCGGATAAGTGCTTGGCTTCGGGA------
+---AATGCTCAAATCGTGGGGGAAGCCAAGGAGAAGTTTCAGGAGATCCAGAAAGCCTAC
+TCT------------------GTTCTCTCAGACTCCAATAAGAGATTCCTGTACGATGTG
+GGAGTCTACGACAACGAT------------------GATGACAATGACGAAAACGGTATG
+GGAGACTTTATAGGGGAGATGTTGGAGATGATGAGCCAAACGAAACCCAATGAGAACAGC
+------CAAGATAGCTTCCAGGAGCTGCAG------------------GAGCTGTTTGTG
+GAGATGTTCCAGGACGACCTG------GATGCCGGA------------------------
+---TTTGGTGGTTCCATCTTCCAC---GATTGCCCCTGGGCTCAACCG------------
+---------ACCAATGGCCAAGATTGCTGGACTTCATCGGGA------------------
+------------------------------------CTGCACTTTGCTAATGGAAGGAGT
+AAG------------------------TGTGGCAACAAGCGGGGCAACTCA---GCTGTG
+AACTTGGGAAAG------------GTCAATCTTGAAGAGTTGGAACATGGTACC------
+------------AGCGACTTCTATTTTGGG---CTAAAT------GATGCAGCACAGCCA
+TCACAAGGGAAAGGAGGCAGT------------------------AATAACAAGAGAAGG
+AATGGAAGAAAGCAAAAGGTTTCATCC---AATCATGATGTCTCATCC------------
+------------------------------------------------------------
+>gnl_Musac1.0_GSMUA_Achr9T18140_001
+---------ATGGCCGCCGGG---------------------------------------
+------------------------------------------------------------
+------------------------------------------------GAGGAAAAGATC
+GGCGATTTCTACACGGTGCTGGGGCTCAGGAAGGAGTGCTCGGAGGCGGAGCTGAGGATC
+GCGTACAAGAAGCTGGCTATGAGATGGCATCCGGATAAGTGCTCGGCTTCGGGA------
+---AACCATCGAAGGATGGAGGAAGCGAAGGAGAAGTTCCAGGAAATCCAAAAAGCCTAC
+TCT------------------GTTCTCTCGGACTCCAGCAAGAGATTTCTGTATGATGTG
+GGAATCTACGATAACGAG------------------GATGATAATGACGAAAAAGGAATG
+GGGGATTTTATTGGGGAGATAGCTCAGATGATGAGCCAAACGAAATCTGGGGAGAATGGT
+------CATGATAGCTTTGAGGAGCTGCAG------------------CGGATGTTCCTG
+GATATGTTCCAGGACGACCTG------GACGCCGGA------------------------
+---TTCGGTGATTCTTCCATCCAC---AGTGGCCCCCAAGCTCGGCCA------------
+---------ACCGACGGTCTCAATTGCTCGATGCCATCAGGA------------------
+------------------------------------CTGCAGTTTGCTGATGGAGGGAAC
+AAT------------------------GGCAGCAACAAGAGAGGCAACTCG---GAGAAG
+------------------------GCAAAGCTGGATGGGTTGGAAAACAGTTCC------
+------------ACTGGCTTCTGCTTCGGG---TTGAAT------GATGCAGGGCAGTCA
+TCAAAAGGAAAAGGAAGCGCT------------------------AATAGCAAGAGAAGG
+AATGGAAGAAAGCAGAAGGTCTCATCC---AAACATGATGTCTCATCCAGTGAT---GCT
+GAGGTCTCATTT------------------------------------------------
+>gnl_Musac1.0_GSMUA_Achr8T23700_001
+---------ATGGCGAGCGAC---------------------------------------
+------------------------------------------------------------
+------------------------------------------------ATGGATGCAAGC
+GGCGATTTCTACTCGGTGCTGGGGCTGAAGAAGGAGTGCTCCGAGGCGGAGCTCAGGAAT
+GCGTACAAGAAGCTCGCTTTGAAGTGGCATCCCGATAAGTGCTCGGCGTCGGGT------
+---AATGAGATTCGCATGAAGGAAGCGAAGCAGCAGTTCCAGGAGATCCAGAAAGCCTAC
+TCT------------------GTTCTCTCCGACTCCAACAAGAGATTTCTGTACGATGTT
+GGAGCCTACGACAAAGAC------------------GACGACAAAGACGAAGAGGGGATG
+GTGGAGTTTCTTGGGGAGATGGCGCAAATGATGAGGCAAACCAAATGCTGTGGGAGCGGC
+------CAGGAGAGCTTCGAGCAGCTGCAG------------------CAGATGTTCGTG
+GAGATGTTCCACGACGATCTG------GACGCGGGA------------------------
+---TTC------------------------------------------------------
+------------------------TGCGGCCACTCCTCGGCC------------------
+---------------------------------------------ACCTCGGGCGCGGCG
+TCC------------------------TGCGGCAACAAACGGGACAACTCG---GCGATG
+GACTCGGGCAAG------------CGGAAGCCGGACGAGTTGGACCCGGCCGCC------
+------------ATTGGGTTCTGCCTCGGG---ACAAAG------GATGCAGGGCAATCC
+TCAAAAGGAAGAGGTAGC---------------------------AACAGCAAGAGAAGG
+AACAGAAGAAAGCAAAAGGCATCATCC---AAGCATGACAACTCATCTCACAAT---GCT
+AAGGTCTCAGCT------------------------------------------------
+>gnl_Musac1.0_GSMUA_AchrUn_randomT02210_001
+---------ATGGAGGGGGAC---------------------------------------
+------------------------------------------------------------
+------------------------------------------------GAGGAGAAGAGC
+GGGGATTTCTACGCGGTGCTGGGGCTGAAGAAAGAGGGCTCCATGGCGGAGCTCAAGAAT
+GCGTACAAGAAGCTGGCGATGAAGTGGCATCCCGATAAGTGTCCTGCGTCAGGC------
+---AATAAGATACGCATGGATAAAGCGAAGGAGAAGTTCCAGGAGATCCAAAAAGCCTAC
+TCT------------------GTTCTCTCCGACTCCAACAAGCGATTCCTGTACGATGTC
+GGAGTTTACGACAAAGAC------------------GATGAGGAAGATGAAGAGGGGATG
+GGGGACTTCATTGGGGAGATCGCGCAAATGATGAGCCAGTCCAAACCCAGCGGGAGCGGC
+------CACGAGAGCTTGGAGGAGCTGCAT------------------CGGCAGGTCGTG
+GAGATGTTCCTCGACGAACTG------GACGCCGGAGAT---------------------
+CGCTTCTCCTCGGCCAACCAA---------------------------------------
+------------GGCGCGTCGTCCTGCGACGGCAGGGACGAC------------------
+------------------------------------------------------------
+------------------------GGCGGCGGTAACAAGCGTGGCAACTGG---GCGGTG
+GACTGGGGCAAG------------GAGAAGCTGAACGAGTTGGGCCCGGGCACC------
+------------GGCGGGTTCTGCTTCGGG---GTGAGT---------------------
+---------------------------------------------------CGCCGAGTC
+CACTCCTTTGATCTTATGATAGACGTA---GTCCACCTCATCCATTCTGATCTG------
+---------------------------------------------------ACTCTGGAA
+>gnl_Orysa6.0_PACid_16843526
+---------ATGGCCGACGGGGGA------------------------------------
+------------------------------------------------------------
+---------------GAGAAGTGC---CGGGACGCGGCCGGC---GAGGGCGGCGGCGGC
+GGCGACCTGTACGCCGTGCTCGGGCTCAAGAAGGAGTGCTCCGACGCCGACCTCAAGCTC
+GCGTACCGGAAGCTCGCCATGAGATGGCATCCGGACAAATGCTCATCCTCCAGC------
+---AGTGCAAAGCACATGGAGGAAGCCAAGGAGAAGTTCCAGGAGATCCAGGGCGCCTAT
+TCC------------------GTCCTCTCAGACTCAAACAAGCGGTTCCTCTACGACGTG
+GGGGTATATGATGATGACGAC------------AATGACGATGACAACCTGCAGGGGATG
+GGGGACTTCATTGGTGAGATGGCCCAGATGATGAGCCAGGCACGGCCAACGAGG------
+------CAGGAGAGCTTTAAAGAACTGCAG------------------CAGCTATTCGTA
+GACATGTTCCAAGCTGATCTT------GATTCGGGT------------------------
+---TTCTGCAATGGACCCTCAAAGTGCTACCATACCCAGGCCCAAAGCCAGACTCGAACA
+TCCTCAACCTCCCCTTCGATGTCACCGTCTCCACCGCCTCCA------------------
+------------------------------------GTAGCTACTGAGGCAGAATCGCCA
+TCA------------------TGTAATGGTATTAATAAGCGTGGTTCATCA---GCAATG
+GACTCTGGGAAG---CCTCCAAGAGCCAGCGAAGTCGGTTCTGGACAGAGTCAA------
+------------TCAGGGTTTTGTTTCGGG---AAGAGT------GATGCTAAACAAGCG
+GCGAAGACGCGAAGCGGGAACACG---------------------GCCAGCCGGAGGAGG
+AACGGCCGGAAGCAGAAGGTGTCGTCG---AAGCACGACGTCTCGTCTGAGGACGAGATG
+CCAGGTTCGCAGTGG---------------------------------CACGGCGTGGCC
+>gnl_Orysa6.0_PACid_16843528
+---------ATGGCCGACGGGGGA------------------------------------
+------------------------------------------------------------
+---------------GAGAAGTGC---CGGGACGCGGCCGGC---GAGGGCGGCGGCGGC
+GGCGACCTGTACGCCGTGCTCGGGCTCAAGAAGGAGTGCTCCGACGCCGACCTCAAGCTC
+GCGTACCGGAAGCTCGCCATGAGATGGCATCCGGACAAATGCTCATCCTCCAGC------
+---AGTGCAAAGCACATGGAGGAAGCCAAGGAGAAGTTCCAGGAGATCCAGGGCGCCTAT
+TCC------------------GTCCTCTCAGACTCAAACAAGCGGTTCCTCTACGACGTG
+GGGGTATATGATGATGACGAC------------AATGACGATGACAACCTGCAGGGGATG
+GGGGACTTCATTGGTGAGATGGCCCAGATGATGAGCCAGGCACGGCCAACGAGG------
+------CAGGAGAGCTTTAAAGAACTGCAG------------------CAGCTATTCGTA
+GACATGTTCCAAGCTGATCTT------GATTCGGGT------------------------
+---TTCTGCAATGGACCCTCAAAGTGCTACCATACCCAGGCCCAAAGCCAGACTCGAACA
+TCCTCAACCTCCCCTTCGATGTCACCGTCTCCACCGCCTCCA------------------
+------------------------------------GTAGCTACTGAGGCAGAATCGCCA
+TCA------------------TGTAATGGTATTAATAAGCGTGGTTCATCA---GCAATG
+GACTCTGGGAAG---CCTCCAAGAGCCAGCGAAGTCGGTTCTGGACAGAGTCAA------
+------------TCAGGGTTTTGTTTCGGGCAGAAGAGT------GATGCTAAACAAGCG
+GCGAAGACGCGAAGCGGGAACACG---------------------GCCAGCCGGAGGAGG
+AACGGCCGGAAGCAGAAGGTGTCGTCG---AAGCACGACGTCTCGTCTGAGGACGAGATG
+CCAGGTTCGCAGTGG---------------------------------CACGGCGTGGCC
+>gnl_Poptr2.2_PACid_18217800
+---------ATGGCAAACGGAGGAGAA---------------------------------
+------------------------------------------------------------
+---------------------------------------------GATAAATGGAAAAGC
+AATGACTTATATCAAGTCTTGGGGTTGAATAAGGAATGCACTGATACAGAGCTCAGGAGT
+GCTTATAAGAAACTTGCACTGAGATGGCATCCAGATCGATGTTCAGCTTCAGGA------
+---AATTCTAAGTTCGTTGAAGAAGCCAAAAAGAAGTTTCAGGCAATTCAACAGGCCTAT
+TCT------------------GTTCTTTCTGACACCAACAAGAGGTTTCTTTACGACGTT
+GGTGTTGATGACAGT------------------------GATGACGACGAAAATGGAATG
+GGTGATTTTCTGAATGAAATGGCTGTCATGATGAGCCAAACGAAGCCTAGCGAAAACATG
+------GAGGAGAGCCTAGAGGAACTGCAA------------------GAATTATTTGAC
+GAGATGTTCCAAGAGGATCTG------CATTCG---------------------------
+---TTTGGGATTGACAGTCAG---------------------------------------
+------------GCTGCTCCTTCATGT------CCTCCTTCT------------------
+------------------------------------TATGTATCCTACAGCGAAAGTTCC
+AAC------------------------TCAAATAACAAACGTGTTTCTGCT---GATATG
+AACTTGGGGAAG---ACTAAAGTGGATGATTCTTCTAGCTTCAACTCTCACTTT------
+------------GAGAAATTCTGTTTAGGG---ACA------------------------
+---------GGTGGAACAGCAGCAACCTTTCAAGAAGGTGAAGGTGGGAGTAAGAGGAGG
+AATTCAAGGAGGAGCCAGCGGCAGACG---AAGGCAAGACAAGAAACAAAGAGTTTCTTC
+GGGCTA------------------------------------------------------
+>gnl_Poptr2.2_PACid_18234651
+---------ATGGAAAATGGAGGAGAA---------------------------------
+------------------------------------------------------------
+---------------------------------------------GAGAAAGGGAAAAGC
+AATGACTTTTATCAGGTTTTGGGGTTGAATAAGGATTGCACTGCCACAGAGCTGAGGAAT
+GCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGATGTTCAGCTTCGGAA------
+---AATTCCAGGTTCGTTGACGAAGCCAAAAAGAAGTTTCAGACAATTCAACAGGCCTAT
+TCT------------------GTTCTTTCTGACACCAACAAGAGGTTTCTTTACGACGTT
+GGTGTTTATGACAGT------------------------GAAGACGACGAAAATGGAATG
+GGCGGATTTATGAATGAAATGGCTGCTATGATGAGCCAAACAAAGCCCCACGAAAACGTG
+------GAGGAGAGCTTTGAGGAATTGCAA------------------GGATTGTTTGAG
+GAGATGTTCCAAGAGGATTTG------GATTCG---------------------------
+---TTTGGGATTGCCTGTCAG---------------------------------------
+------------GCTACTACC---------------------------------------
+------------------------------------TGTGTGTCATACAGCGAAAGCTCC
+AAC------------------------TCAAATGATAAACGTGTTTCTGTC---GATATG
+AACTTGAAGAAG---ACAAAGGTGGATGATTCTTCTGGCTTCAATTCTCACGTC------
+------------GAGAAGTTCTGTTTAGGG---GTA------------------------
+---------AGTGGAACACCAGCAATCTTTCAAGAAGGGGAA---GGGAGTAAGAGGAGG
+AGTTCAAGGAGGAACCGGCGG---------------------------------------
+------------------------------------------------------------
+>gnl_Poptr2.2_PACid_18234649
+ATGCTAAGAATGGAAAATGGAGGAGAA---------------------------------
+------------------------------------------------------------
+---------------------------------------------GAGAAAGGGAAAAGC
+AATGACTTTTATCAGGTTTTGGGGTTGAATAAGGATTGCACTGCCACAGAGCTGAGGAAT
+GCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGATGTTCAGCTTCGGAA------
+---AATTCCAGGTTCGTTGACGAAGCCAAAAAGAAGTTTCAGACAATTCAACAGGCCTAT
+TCT------------------GTTCTTTCTGACACCAACAAGAGGTTTCTTTACGACGTT
+GGTGTTTATGACAGT------------------------GAAGACGACGAAAATGGAATG
+GGCGGATTTATGAATGAAATGGCTGCTATGATGAGCCAAACAAAGCCCCACGAAAACGTG
+------GAGGAGAGCTTTGAGGAATTGCAA------------------GGATTGTTTGAG
+GAGATGTTCCAAGAGGATTTG------GATTCG---------------------------
+---TTTGGGATTGCCTGTCAG---------------------------------------
+------------GCTACTACC---------------------------------------
+------------------------------------TGTGTGTCATACAGCGAAAGCTCC
+AAC------------------------TCAAATGATAAACGTGTTTCTGTC---GATATG
+AACTTGAAGAAG---ACAAAGGTGGATGATTCTTCTGGCTTCAATTCTCACGTC------
+------------GAGAAGTTCTGTTTAGGG---GTGGAA------CACCAGCAATCTTTC
+AAGAAGGGGAAGGGAGTAAGAGGAGGAGTTCAAGGAGGAACC---GGCGGTAGAGAGAGG
+AAAGGCAGGAAACAAGAAGTTTCATCT---GGCTATGATGTCTCCTCCCATGAC---CAT
+GGTATTTCTGCTTCA---------------------------------------------
+>gnl_Poptr2.2_PACid_18234650
+---------ATGGAAAATGGAGGAGAA---------------------------------
+------------------------------------------------------------
+---------------------------------------------GAGAAAGGGAAAAGC
+AATGACTTTTATCAGGTTTTGGGGTTGAATAAGGATTGCACTGCCACAGAGCTGAGGAAT
+GCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGATGTTCAGCTTCGGAA------
+---AATTCCAGGTTCGTTGACGAAGCCAAAAAGAAGTTTCAGACAATTCAACAGGCCTAT
+TCT------------------GTTCTTTCTGACACCAACAAGAGGTTTCTTTACGACGTT
+GGTGTTTATGACAGT------------------------GAAGACGACGAAAATGGAATG
+GGCGGATTTATGAATGAAATGGCTGCTATGATGAGCCAAACAAAGCCCCACGAAAACGTG
+------GAGGAGAGCTTTGAGGAATTGCAA------------------GGATTGTTTGAG
+GAGATGTTCCAAGAGGATTTG------GATTCG---------------------------
+---TTTGGGATTGCCTGTCAG---------------------------------------
+------------GCTACTACC---------------------------------------
+------------------------------------TGTGTGTCATACAGCGAAAGCTCC
+AAC------------------------TCAAATGATAAACGTGTTTCTGTC---GATATG
+AACTTGAAGAAG---ACAAAGGTGGATGATTCTTCTGGCTTCAATTCTCACGTC------
+------------GAGAAGTTCTGTTTAGGG---GTGGAA------CACCAGCAATCTTTC
+AAGAAGGGGAAGGGAGTAAGAGGAGGAGTTCAAGGAGGAACC---GGCGGTAGAGAGAGG
+AAAGGCAGGAAACAAGAAGTTTCATCT---GGCTATGATGTCTCCTCCCATGAC---CAT
+GGTATTTCTGCTTCA---------------------------------------------
+>gnl_Soltu3.4_PGSC0003DMP400016105
+---------ATG------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------------------GGC
+AATGATTATTATGCAGTTTTGGGATTGAAAAAGGAATGCACTGAAACAGAGCTTAGGAAT
+GCTTATAAGAAGCTTGCACTGAAATGGCACCCAGATCGCTGTTCAGCATCGGGG------
+---AATTCGAAGTTTGTAGATGAAGCAAAGAAGAAATTTCAGGCAATTCAAGAAGCATAT
+TCT------------------GTGTTATCGGATGCAAACAAAAGGTTTCTGTACGATGTA
+GGAGTTTATGACTCTGGT------------------GATGATGACGACGAAAATGGCATG
+GGTGATTTCCTGAATGAAATGGCAGCTATGATGAGCCAAAATAAGTCCAATGAAAATCAG
+------GAAGAAACCTTTGAGGAATTGCAG------------------GATATGTTTGAC
+GAAATTTTCAATAGTGATAAT------GGGATG---------------------------
+---------TCTTCTTCTTCT---------------------------------------
+------------TCTTCTTCTTCTCGGACTGGAACTCCTTCA------------------
+------------------------------------ATGTGTTCTACTACATCGTCTACA
+TCTTCCAGTGAGACC---TTTTTTACCTTTTCCAACAAAAGAAGTTCAGGT---GAAATG
+AAGTCGGGTAAA------------------------GGCGATTCTTGCCAATTC------
+------------CAAGGATTTTGTGAAGGG---ACA------------------------
+---------GGTGGAGCATCTGGAAAAAGCAATGAAAGAGAA---CGGAGTCGGAGGAAA
+AATTCCAAGAGTGGACGGAAGCAA------------------------------------
+------------------------------------------------------------
+>gnl_Soltu3.4_PGSC0003DMP400016106
+---------ATG------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------------------GGC
+AATGATTATTATGCAGTTTTGGGATTGAAAAAGGAATGCACTGAAACAGAGCTTAGGAAT
+GCTTATAAGAAGCTTGCACTGAAATGGCACCCAGATCGCTGTTCAGCATCGGGG------
+---AATTCGAAGTTTGTAGATGAAGCAAAGAAGAAATTTCAGGCAATTCAAGAAGCATAT
+TCT------------------GTGTTATCGGATGCAAACAAAAGGTTTCTGTACGATGTA
+GGAGTTTATGACTCTGGT------------------GATGATGACGACGAAAATGGCATG
+GGTGATTTCCTGAATGAAATGGCAGCTATGATGAGCCAAAATAAGTCCAATGAAAATCAG
+------GAAGAAACCTTTGAGGAATTGCAG------------------GATATGTTTGAC
+GAAATTTTCAATAGTGATAAT------GGGATG---------------------------
+---------TCTTCTTCTTCT---------------------------------------
+------------TCTTCTTCTTCTCGGACTGGAACTCCTTCA------------------
+------------------------------------ATGTGTTCTACTACATCGTCTACA
+TCTTCCAGTGAGACC---TTTTTTACCTTTTCCAACAAAAGAAGTTCAGGT---GAAATG
+AAGTCGGGTAAA------------------------GGCGATTCTTGCCAATTC------
+------------CAAGGATTTTGTGAAGGG---GTGGAG------CATCTGGAAAAAGCA
+ATGAAAGAGAACGGAGTCGGAGGAAAAATTCCAAGAGTGGAC---GGAAGCAATAGGATG
+GATGCTAAAAGGCAAAAGGTTCTATCA---------------------------------
+------------------------------------------------------------
+>gnl_Ambtr1.0.27_AmTr_v1.0_scaffold00007.329
+---------ATGGCACCCCGA---------------------------------------
+------------------------------------------------------------
+------------------------------------------------GGAGAGAAAGAC
+AGTGATTTTTATGCAATTTTAGGGTTGAAGAAGGAGTGCTCTGCTTCAGATCTCAGAAAT
+GCGTACAAAAGGCTCGCACTTCGGTGGCATCCAGATAGGTGCTCTGCCTCAGGG------
+---AACACAAAGTTTGTGGAGGAATGCAAGAAAAAGTTCCAGGCCATTCAGCAGGCTTAT
+TCC------------------GTGCTCTCGGATGCAAATAAGAGGTTTTTGTACGATGTT
+GGAGCATATGGAAGT------------------------GACGATGACGATCAGGGAATG
+GGTGAATTTCTTGGGGAGATGGCGGTAATGATGAGCCAGACAAAGCCCAGTGAAAAAGGG
+------CCGGAGAGCTTTGAGGATCTACAG------------------AACTTGTTTCAG
+GAGATGTTCGAAAGGGATCTG------GACATG---------------------------
+---TTTAAGTCATCGACCTCCCAC------------------------------------
+------------AACAACAACAATGATAACAACAATAATAAT------------------
+------------------------------------CATAGGAGTAGTGACAATAATAAT
+TGTAGTAGTGTTCAT---TGTTTTAGTAACACCAACAAGAGGAATTGCTCG---GATATG
+AATGCCGGAGAA---GCCTCGGAGGTCGGGCGCTTTGCTTTCTCATGCTATGCGACAGAG
+TTCCTGCACAAGCAAACTTTCTCCGTCGGG---GCGGAT------------------GAT
+GTGCGATCGGAGTCG------------------------------AGCAACAAGAGACGA
+AACGGGAGGAAACAGAAATCCACCTCC---TCTTCAAGGAAAAGT---------------
+------------------------------------------------------------
+>gnl_Aquco1.0_PACid_18141277
+---------ATGGCTAGT------------------------------------------
+------------------------------------------------------------
+------------------------------------------------GAAGAAGAAGCA
+AGTGATTTCTATAAAGTTTTGGGATTGAAAAATAACTGTTCTTCCTTGGAGCTCAGGAAC
+GCTTATAAGAAGCTTGCACTGAAATGGCATCCGGATCGTTGTGCTGCTTCAGGA------
+---AACTCAAAGTTTGTTGAAGAAGCAAAGAAGAATTTTCAAGCAATACAAGAAGCTTAT
+TCT------------------GTTCTTTCAGATGAGCAGAAACGATTTATGTATGACGTT
+GGTGTCTACGATAAAGAT------------------GATGATGACGAAAATGAAGATATG
+GGCGATTTTTTAGGTGAAATGATGTCTATGATGAAGCAAGAAAATACTAGTGCGGATGGA
+------CAACAAAGTTTTGAAGACCTTCAA------------------AACCTATTCCAG
+GAAATGGTTCAAAATGACAAA------GAATTT---------------------------
+---TATAATCCAGCCTCTCAA---------------------------------------
+------------AACTCGTCGATATATAATGCTAGTAACAACATGTTCTCCTTCTCTAAT
+AACGAGAACTTAAACAATGCTAGCAACAACACATTCTCCTCTTTTTATAATGAGAACCTA
+AAC------------------------AGCAGCAACAAGAAAAGTTGCTCA---AGTATG
+AGCGCAGAAAAT------ACCAAGGTGGACTTTAACATGGAATCATTGGACTTC------
+------------CGCAGCTTTTCTATTGGG---TTAGAA------GGCGGTACATCATTT
+CAAAACTCCAAAGGGAGAGGA------------------------GTAACGGGTAGGCGG
+ACAGGAAGGAAACAGAAGGGGTCGTCC---TGTAATGATATGTCTTCCCATGAT---TCT
+AAGATTTTGGCG------------------------------------------------
+>gnl_Arath10_AT3G14200.1
+---------ATGGCGTCCAGTAAT------------------------------------
+------------------------------------------------------------
+---------------------------------------------AGCGAGAAGATCAAC
+GAGAATCTGTACGCTGTTCTGGGTTTGAAGAAGGAATGTTCTAAGACGGAGCTCCGTTCT
+GCTTATAAGAAGCTTGCTCTCAGATGGCATCCAGATCGTTGTTCGTCA------------
+------ATGGAGTTTGTAGAAGAAGCAAAGAAGAAATTTCAGGCAATCCAAGAAGCCTAC
+TCT------------------GTTCTGTCTGACTCCAACAAGAGGTTCCTGTATGATGTT
+GGTGCTTATAATACTGAT------------------GATGATGATGACCAAAACGGAATG
+GGAGATTTCTTGAACGAAATGGCGACTATGATGAATCAATCCAAGCCTAGTGATAATAAC
+---ACAGGGGACAGTTTTGAACAACTACAA------------------GATCTGTTTAAT
+GAGATGTTTCAAGGAGACGCT------GCAGCA---------------------------
+---TTCCCATCATCA---------------------------------------------
+------------------TCGTCCTGCTCCACTTCAAATTTC------------------
+------------------------------------ACTTCATCTCGTAGTTTTGTATTC
+GAT------------------------ACAAATTCTCAGCGGTCATCTTCGTTTGCGACA
+AGTTCGATGGGG------ATGAATAATGATCCTTTCGGATATGACCCGAGAGCT------
+------------CATTCCTTCTCTTTAGGG---GTGGAC------CATCAGCAAGAGTTC
+AAGAAAGGGAAAAAC------------------------------AATGGCGGAAGAAGA
+AACAGGAGAAAGAACAATGTTCCATCGGCTGGTCACGAAACGTCGTCGTCAAACAACTAT
+GGAGTCCCCACCTCA---------------------------------------------
+>gnl_Bradi1.2_Bradi3g60090.1
+---------ATGGCCACCGGGGGC------------------------------------
+------------------------------------------------------------
+---------------GACAAGTGCGGCGGAAAGCCGGCGGCC---GCGGGGGTGGGCGGC
+GGTGACCTGTACTCTGTGCTGGGCGTCAACAAGGAGTGCTCCGACGCCGACCTCAAGGTC
+GCCTACCGGAAGCTCGCCATGAGATGGCATCCGGATAGATGCTCCTCCTCCAGC------
+---AGCACCAAGCACATGGAGGAAGCAAAAGAGAAGTTCCAGGAGATCCAGGGCGCCTAT
+TCC------------------GTCCTCTCCGATGCCAACAAGCGCTTCCTCTATGACGTG
+GGGGTATATGAAGAACATGAAGAA---------GAAGATGATGACACTCTGCAGGGGATG
+GGGGACTTCCTTGGTGAGATGGCCCATATGATGAGCCAGACGCAGCCAGCGAGA------
+------CAGGAAAGCTTTGAGGAGCTCCAG------------------CAGCTCTTCGTG
+GACATGTTCCAGTCTGATATT------GAATCGGGA------------------------
+---TTCTGCAACGGACCTGCCAAG---GACCATGACCCAGTCCAAAGACAGACGCGAACA
+TTCTCGACCCCTCCTTCGCCATCGCCATCTCCACCGCCTCCA------------------
+------------------------------------CTAGCTACAGTGGACGAAGCGGCA
+TCA------------------TGTAATGGCATCAATAAGCGTGGCTCATCA---GCAATG
+GGCTCTGGGAAG---CCTCCAAGAGCTGGTGAAGTGAGTGGGGGTCACGGCCAG------
+------------TCTGAGTTCTGTTTCGGG---ATGAGC------GACGCCAAGCAAGCG
+CCGAAGGCGCGAGGCGGGAAC------------------------GCTAGCAGGAGAAGG
+AACGGCCAGAAGCAGAAACTGTCGTCG---AAGCACGACGTCTCCTCCGGCGATGAGATG
+CCGAGACCA---------------------------------------CATGCAGCAGTA
+>gnl_Carpa1.181_PACid_16420351
+---------ATGGCGGATGGA---------------------------------------
+------------------------------------------------------------
+---------------------------------------------GAAGACAAGAACAAC
+AGTGATTTGTATGCGGTTCTTGGATTGAATAAGGAATGTACTCCAGCAGAGCTCAGGAAC
+GCTTATAAGAAACTTGCAATGAGATGGCATCCAGATCGCTGTTCCGCGTCGGGG------
+---AATTCAATGTTTGTGGAAGAAGCAAAGAAGAAATTTCAGGCAATCCAAGAAGCCTAC
+TCT------------------GTTCTTTCTGACGCAAACAAGAGGTTTCTGTACGACGTC
+GGAGCTTACGAAAGT------------------------GATGACGACGAAAATGGAATG
+GGTGATTTTTTAAACGAAATGGCAGCCATGATGAGCCAAACAAAGCCTAATGAGAATGGG
+AATGCACAAGAGAGCTTTGAAGAATTGCAA------------------GAGTTGTTTCAA
+GAGATGTTTCAAGGGGATATGGGATTCAACACA---------------------------
+---TTTGGATCTAGTTCTCAGCCT------------------------------------
+------------ACTACTTCTTCGTGTTCTGCTTCCTCTGCA------------------
+------------------------------------TATGCAACCTGTAGCGAAACCTCC
+AAT---------------------CCTAACAACAACAAGCGCAATTCATCA---GAAATG
+AATTATGGCAAG---AAAAAGGTAGATGATTCTTCAGGGTTTCATGCTCATTTC------
+------------CAAACCTTTTGTTTAGGG---GTGGAA------CAGCAGCAAGATTTC
+AAGAAGGGGAAGGAAGCAAGAGGAGGAATTCGAGGAAAACCC---GGAGGTAGTAGGAGG
+CAGGGAAGGAAACAGAAGGTTTCATCT---CGCCACAATGTCTCATCCAATGAC---TTG
+GGCATTTCTGCTTCC---------------------------------------------
+>gnl_Frave2.0_gene05408
+---------ATGGCGGGGGGAAAGTGGGTCCCCCCACCCCTGTCCCAGTTTCATCTTCAC
+ATAAAGAGGTTCCGTCGACGTCAGAAAGTCTCTGGATCCAGTGGAAACACAGAACCTTCT
+GGATACACAGACTGCAAAAATATCTCCAATCGA---------AGAATGGAAGAGAAAGGC
+AATGACTTTTATGCTGTTATGGGGTTGAAGAAGGAATGCTCTGACTCGGAGCTCAGGAAT
+GCTTATAAGAAACTTGCACTGATATGGCACCCAGATCGTTGCTCTGCCTCAGGA------
+---AATTCAAAGTTCGTGGAAGAAGCCAAGAAGAAGTTTCAGGACATTCAACAAGCCTAT
+TCT------------------GTTCTGTCCGACGCCAACAAGAGGTTTCTGTACGATGTA
+GGAGCTTATGAAAGT------------------------GATGATGACGAAAATGGAATG
+GGTGATTTTTTAAACGAGATGGCGGTGATGATGAGCCAGACTAAGCCGAATGAAAATGGA
+------GGAGAGAGCTTCGAACAATTGCAG------------------GAGCTCTTTGAA
+GAAATGTTTCAGGGGGATATT------GAGGGC---------------------------
+---TTTAGCTCCTGCTCTCAGCCT------------------------------------
+------------CCTACTTCCTGTTCTACTTCCTCATCTTCA------------------
+------------------------------------TACGCATTGTACTGTGAAAATTCT
+ACT------------------------CCCAGTAACAAACGTAATTCCTCC---GCAATG
+AATTATGGCAAC------GCAACCCTGGACAGTTCTGGTTTTGATGCTCATTTT------
+------------CACAATTTCTGTGTAGGG---ACA------------------------
+---------GGCGGGAAGCCAGCAAAGGATCGGGAAGGGGAT---GCCAGGAAGAGAAAG
+GATTCCAGGAGGAGTAACCGG---------------------------------------
+------------------------------------------------------------
+>gnl_Mimgu1.0_PACid_17694730
+---------ATGGCTGCTGAT---------------------------------------
+------------------------------------------------------------
+------------------------------------------------GAAGAGAAAAGC
+AGCGATTTTTACGGCGTTCTGGGGCTGAGGAAAGAATGTACGGCGGCGGAGCTCAGGGTT
+GCCTACAAGAAACTTGCAATGAAATGGCATCCAGATCGTTGCTCTGCTTCTGGG------
+---AATTTAAAGTATGTGGAGGAAGCAAAGAACAAGTTTCAAGCTGTCCAACAGGCCTAT
+TCT------------------GTGCTTTCCGATGCCAACAAAAGGTTTCTCTACGACGTA
+GGAATCTACGATTCTGAA------------------GACGATGCTGACGAAAACGGTATG
+GGTGATTTCTTGAATGAAATGGTAGCAATGATGGGCCAAAGTAAACCAAATGAAAATAAA
+------AACGAGAGCTTCCAAGAATTGCAA------------------GATCTATTCGAG
+GAAATATTCAACAATGACGCG------GAAGAGGTT------------------------
+---TTCAAGATTCCTCCTCCGCAC------------------------------------
+------TTTCCGTACCAAGATTCTTGCAGCGAGACCCGCACC------------------
+------------------------------------------------------------
+---------------------------GCATCGAACAAGAGGAACGCCCGC---GAAATG
+GGCTCCGTAAAT---------------TTCAGTAATATCGAAGCCACACCATTT------
+------------GAAGGGTTCTGCATAGGG---GAAAATGTAATTTTTGGGGGAGAGAGA
+ATACAAACGAGGCCCGGA---------------------------GGAGGTAGTAGGAGG
+ACG------AAGCCGAAGATTTCGACA---TCGATCGAT---------------------
+------------------------------------------------GGTTTAATTAGT
+>gnl_Nelnu1.0_NNU_010544-RA
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---ATGAACCTGTTGTTGCAGAAATGGCATCCGGATCGATGCTCCTCGTCGGGA------
+---AACTCTAAGTTCGTGGAAGATTCAAAGAAGAAATTTCAGGCAATTCAAGAGGCTTAT
+TCT------------------GTTCTATCCGACGAGAATAAGCGATTTCTTTACGACGTT
+GGAGTTTACGACTGCGACGAC---------------GATGACGATGACGAAAACGGAATG
+GGAGAATTTTTGGGGGAAATGGCGACTATGATGAGCCAAATTAAACCCAGCGAGAACGGG
+------CCGGAGAGTTTGGAGAAGCTGCAG------------------GAACTGTTCGAG
+GAAATGTTCCAAAGGGACATG------GATGATGGT------------------------
+---TTCTTCTCCCCCTCCCCCCAATGCGCT------------------------------
+---------TCTTTTTCTTCGTCTTGCTCATCTTCTTCGTCG------------------
+---------------------------TCGACGACTTATTTTTCATATAATAACAACAAG
+CAC---------------------------GACAATAAAAGGAATTGCTCC---GACATC
+AGTTCTATGGAC------GATTTCTACACATTTGGCACGGATTCTATACAATTC------
+------------AGCAATTTCTGCATTGGG---GTGGAA------GGAGGAGAA---GAT
+TCAAAAGTAAGAGGAGGAAAG---------------------------TCAAGGCGGAAG
+AGCAACAGGAGACAAAAAGTTTCATCGTCTAAACACGATCCGTCGTGCCGT---------
+------------------------------------------------------------
+>gnl_Solly2.3_Solyc03g123560.2.1
+---------ATG------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------GAAGACAAAAGC
+AATGATTATTATGCAGTTTTGGGGTTGAAGAAGGAATGCACTGACACAGAACTTAGGAAT
+GCCTATAAGAAGCTTGCACTGAAATGGCACCCAGATCGCTGTTCAGCATCGGGG------
+---AATTTGAAGTTTGTAGATGAAGCAAAGAAGCAATTTCAGGCAATTCAAGAAGCATAT
+TCT------------------GTGTTATCGGATGCAAACAAAAAGTTTTTGTACGATGTA
+GGAGTTTATGACTCTGGT------------------GATGATGACGACGAAAATGGCATG
+GGTGATTTCCTGAATGAAATGGCAGCTATGATGAGCCAAAATAAGTCCAATGAAAATCAG
+---GGAGAAGAAACCTTTGAGGAATTGCAG------------------GATATGTTTAAT
+GAAATGTTCAACAGTGATAAT------GGAACG---------------------------
+---TTTTCTTCTTCTTCTTCT---------------------------------------
+------------TCTTCTTCTTCTTGGACTGGAACTCCTTCA------------------
+------------------------------------ATGTGCTCTACTACATCATCTACA
+TCTTCAAGTGAGACT---TTTTTAACCTTTCCCAACAAGAGAAGTTCAGGT---GAAATG
+AAGTCGGGTAGT---------------AGTGTAAGAGGCGATTCTTGCCAATTC------
+------------CAAGGATTTTGTGTAGGG---GCA------------------------
+---------GGTGGAACTTCTGGAAAATGCAATGAAAGAGAA---CGAAGTTGGAGGAAA
+AATTCCAAGAGTGGACGGAAGCAT------------------------------------
+------------------------------------------------------------
+>gnl_Sorbi1.4_PACid_1968370
+---------ATGGACGCCGGGGGA------------------------------------
+------------------------------------------------------------
+---------------GAGAAGTTCAGCGACGCGGCGGCGGCGGAGGGCGGTGAGGGCGGC
+GGCGACCTCTACGCCGTCCTCGGGCTCAAGAAGGAGTGCTCCGACGCCGACCTCAAGGTC
+GCTTACCGGAAGCTCGCCAAGAAATGGCACCCGGACAAATGCTCCTCCTCCAGC------
+---AGCGTGAAACACATGGAGGAAGCCAAGGAGAAGTTCCAAGAGATCCAGGGCGCCTAT
+TCC------------------GTACTCTCTGACGCCAATAAACGGCTCCTCTACGATGTT
+GGAGTATACGACGATGAGGAC---------------GACGAGGATAGCATGCAGGGGATG
+GGTGACTTCATTGGTGAGATGGCCCAGATGATGAGCCAGGTGCGGCCGACGAGG------
+------CAGGAAAGCTTTGAGGAGCTGCAG------------------CAGCTTTTTGTG
+GACATGTTCCAGTCTGATATT------GATTCAGGA------------------------
+---TTCTGCAACGGGTCTGCTAAG---GATCAAGTTCAGGGGCAAGCCAAAAGTAGAACA
+TGCTCGACCTCACCTTCATCATCACCGTCCCCACCTCCTCCT------------------
+------------------------------CCTACTATAGTAAAGGAGGCAGAGGTGTCA
+TCA------------------TGTAATGGCTTCAATAAGCGGGGTTCATCA---GCAATG
+GACTCAGGGAAG---CCTCCAAGGCCT------GTTGAAGGCGGTGCTGGTCAG------
+------------GCTGGATTTTGTTTTGGG---GTGAGC------GATACGAAGCAAACG
+CCGAAGCCGAGAGGTCCGAAC------------------------ACCAGCCGGAGGAGG
+AACGGCCGGAAACAGAAGCTGTCATCC---AAGCACGATGTTTCATCTGAAGATGAAACG
+GCCGGTTCC---------------------------------------------------
+>gnl_Thepa2.0_Tp3g12470
+---------ATGGCGTCGAACAAT------------------------------------
+------------------------------------------------------------
+---------------------------------------------AGCGAGAAAGGAAAC
+GATGATTTGTATGGTGTTCTGGGCTTGAAGAAGGAATGTACGACGACGGAGCTCCGTACT
+GCTTATAAGAAGCTTGCTCTAAGATGGCATCCAGATCGTTGTTCGTCAATGGGG------
+---ACTCCAGAGTTTGTAGACGAAGCAAAGAAGAAGTTTCAGGCAATCCAAGAGGCCTAT
+TCT------------------GTTCTGTCTGACTCCAACAAGAGGTTCCTCTATGATGTT
+GGAGCTTATAACAGT---------------------GATGATGAAGACCAAAACGGTATG
+GGAGATTTCTTGAACGAAATGGCGGCAATGATGAATCAGTCCAAGCCTAGTGAGAATAAC
+---TCAGGGGACAGTTTTGAGCAGCTACAA------------------GATCTGTTTAAT
+GAGATGTTTCAAGGAGACGCT------GCAGCA---------------------------
+---TTCTCATCATCATCATCA---------------------------------------
+------------------TCATCTTGCTCTGCTTCGACTTTT------------------
+------------------------------------ACTTCCTCTTGTAGCTTTGTCTTT
+GAC------------------------ACAAATAGTCAGCGGTCACCGTTT---GAGACA
+AGCTCAATGGGG---------ACTAATGATCTTTTTGGATTCGATCACAGTGCT------
+------------CACACCTTCTCTTTAGGG---GTGGAA------CATCAGCAGGATTTC
+AAGAAGGGGAAGAAC------------------------------AGTGGTGGAAGAAGA
+AACAGAAGGAAGAACAATGCTCAATCGGCTGCTCACGAGACGGCGTCGTCCAACAACTAT
+GGAGTCCCCACTTCA---------------------------------------------
+>gnl_Theca1.0_Tc06_g010450
+---------ATGGCAAATGGA---------------------------------------
+------------------------------------------------------------
+------------------------------------------------GAAGAGAAAAAC
+AATGATTTTTATGCAGTTTTGGGGTTGAATAAAGAATGCACTCCGACAGAGCTCAGGACT
+GCTTATAAGAAACTTGCCCTGAGATGGCACCCTGATCGTTGCTCAGCTTCGGGA------
+---AATTCAAAGTTCGTGGAAGAAGCCAAGAAGAAATTTCAGGCCATTCAACAAGCCTAT
+TCT------------------GTTCTGTCTGACTCAAACAAGAGGTTTCTGTACGACGTA
+GGAGCTTATGACAGT------------------------GATGATGACGAAAATGGAATG
+GGAGATTTTTTGAACGAAATGGCAGGGATGATGAGCCAGACAAAATCTAATGAAAATGGA
+------GGGGAAAGCTTCGAGGAACTACAG------------------GAATTGTTTGAA
+GAAATGTTCCAAGCGGACATT------GATTCA---------------------------
+---TTTGAGTCTACTGGTCAG---------------------------------------
+------------TCCACTCCTTCCTGCTCTGCTTCATCTTCG------------------
+------------------------------------TTTGGGTCATATGGTGAAAGTTCC
+AGC---------------------------TCCAACAAGCGGAATTCCTCT---GAAATG
+AGTTCTGTGGAG---ACTAGGCTGGAGAGTTCTTCTAGCTTCGATGCACAATTT------
+------------CACAGTTTTTGTCTCGGG---GTGGAA------CACAGGCAAGATATC
+AAGCAACACAGAGGAGCCAGAGGAGGAATGCGAGGAGCAGCCGGCGGTAGTAGACGGAGA
+AATGGCAGGAAACAAAAGGTTTCATCT---GGCCATGATGTTACTTCCAACGAC---TGT
+GGCATTTCTGCTTCA---------------------------------------------
+>gnl_Vitvi12X_PACid_17827068
+---------ATGGCCGCCGGA---------------------------------------
+------------------------------------------------------------
+------------------------------------------------GAAGAGAAGAGC
+AATGATTTTTATGCCGTTCTAGGGTTGAAAAAGGAATGCACCGCCTCCGAGCTCAGAAAT
+GCGTACAAGAGACTTGCCCTGATGTGGCACCCAGATCGTTGCTCCTCGTCGGGA------
+---AACTCGAAATTCGTGGAAGAAGCGAAGAAGAAATTTCAGGCCATACAAGAAGCCTAT
+TCA------------------GTTCTCTCTGATGCGAATAAAAGGTTTCTGTACGACGTT
+GGAGCCTACGACAGC------------------------GATGATGACGAAAACGGAATG
+GGGGATTTTTTGAATGAGATGGCGGTTATGATGAGCCAAACCAAGTCCAATGAAAATGGG
+------AAGGAGAGCTTTGAGGAGTTGCAG------------------GAGCTCTTTGAG
+GATATGTTCCAAAGGGATGTC------GACGCA---------------------------
+---TTCAACTCTGCCTCTCATCAC------------------------------------
+------------CCCATGAACTCTTTCCCCAGTTCTACTTCC------------------
+------------------------------------ACTTCTTCCTACTGCGAAAGCTCC
+AAT------------------------GCCAACAACAAGCGGAATTCGGCT---GAAATG
+GGCTCTGGAAGGATGATGAGTGCAGGGGAGTCCTCTGCTTTTGATGCCCACTTT------
+------------CAGAGCTTCTGCTTTGGG---ACA------------------------
+---------GGCGGCACGCCAGGGAGATTTCAGGAGGGGGAA---AGGAGCAAGAGGAGG
+AATTCCAGGAGGAGCCAACGG---------------------------------------
+------------------------------------------------------------
+>gnl_Selmo1.0_PACid_15401289
+---------ATG------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------GAGAAGAGGAAA
+GAGGATCCCTACACTGTTCTTGGTGTCCAAAAGTCGAGTTCTAGCTCGGAAATTCGCTCC
+GCTTATCGGAAGCTCGCCATGAAATGGCATCCAGATAAG---------------------
+---CAACACTCTTTAGAGGATCAAGCAAAAGCGAAGTTCCAGGGCATTCAAGAAGCTTAT
+TCA------------------GTGCTATCCGACGACAAAAAAAGAGTTCTTTATGATTCG
+GGACTTTATGACGAGGGA------------------GATGACGAG---------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------GTGAGT---------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+>gnl_Orysa6.0_PACid_16864430
+---------ATGGCCCGCGGCGGCGGC---------------------------------
+------------------------------------------------------------
+------------GGC------------------------------GGCGGCGGCGCGGAC
+GCCGACCTGTACGCCGTCCTCGGCCTCAGCAGGGAGTGCACCGACGCCGACCTCAGGCTC
+GCCTACCGCAAGCTCGCCATGATATGGCATCCGGACAGGTGCTCGGTGGCCGGCGGCAGC
+GCGAGCGCGGCGGGCGTCGACGAGGCCAAGGAGCGATTCCAGGAGATCCAGGGCGCCTAC
+TCC------------------GTGCTCTCCGACTCCAACAAGCGCTTCCTCTACGACGTC
+GGCGTCTACGACGGCAACGACGGCGACGACGACGACGACGAAGCAGATCTGTCGGGGATG
+GGCGATTTCCTCGGCGAGATGGCGCAGATGATGAGCCAGGCGACGCCT------------
+------GCGGAGAGCTTCGAGGAGTTGCAG------------------CAGCTGTTCGTG
+GACATGTTCCAGGACGACATC------GACGCCGGC------------------------
+---CTCTGCCAGTCGACGCCG---------------------------------------
+------------CCGCCGCCGTCATGGCCGTCGCCTCCGGCG------------------
+---------------------------------------GCCGCCAATGCACGATCGCCG
+GCGGCGGCGGCGACT---TCACGCAAGGGCGTGAACAAGCGGTGCTCACCG---GCGGCG
+ATGGACATGGAC---------------TCCGGTTTGAGCAGCCTGCTGGGCATT------
+------------TCGGGCTTCTGTTTCGAG---GCGCCA------TGGACGTCGCAGGAC
+GCGAGCACTGCCGCCGGCGGTGGC---------------------GGCGGCAAGAGGAGA
+AAGCAGAGGCCGCCGCCGGCG---------AGCCACAACGTG------------------
+------------------------------------------------------------
+>gnl_Sorbi1.4_PACid_1982925
+---------ATGGCTGCTACAAGTCAC---------------------------------
+------------------------------------------------------------
+------------TGCGGCAACATCCAGGACCAGGACGAAGAAGCTTCGGCTCCTGGCGCC
+GCCGACCTCTACGCCGTGCTCGGGCTCAACAGGGAGTGCACCGACGCCGAGCTCAGGGTC
+GCGTACCGGCGGCTCGCCATGATATGGCATCCGGACAGGTGCTCGGCGTCCGGC------
+AGCTCGCCGGCGCGCATGGAGGAGGCCAAGGAGCGGTTCCAGGAGATCCAGGGCGCCTAC
+TCC------------------GTGCTCTCCGACTCCAACAAGCGGCTCCTCTACGACGTC
+GGCGTCTACGACAGCGACGAC---------------GACGAGGCTGACCTGTCGGGGATG
+GGCGACTTCCTCGGAGAGATGGCCGACATGATGAGCCAGGCCACGCCA------------
+------ACGGAGACCTTCGAGGAGCTGCAG------------------CAGGTGTTCGTG
+GACATGTTCCAGGACGACCTGGAC---GACGCCGGC------------------------
+---TTCTTCGGCGGGCTTCCGACG---ACGGGCCGCAGGGCCCAGGCA------CCCAGC
+ACCTCGCTGCCGCCGTCGGTGTCGTCGTCGCCGTTGCGGCCG------------------
+------------------------------ACGCCTGCCGCTGGAAGAAGCAAGGGTCCG
+CAAGCGACGCCGTCGTCGTCGTTTAAAGGCGTCGAGAGGCGGGGTTCGACG---TCGACG
+GCGAAACGGCCGAGGCCCAACGGGTCGGCGGGCCTGGAATCGGACCTGGGCCTC------
+------------TCCGGATTCTGCTTCATG---GTGAGT------AAGGAGATGAGCAAG
+TCGAAGGAGAGGCAAGCGGTA---------TGGGCCAGTGAC---GACGGTGACAGGAGC
+ACCGATGGCAAGCAGAGGTTGTCGACG---AGCCGCGATGTCTCCGGTGGTGGG---ATG
+TCACGCTCACTGCAGGGCCAAAGCAGCAAAAACTTGTTGCAGTGTATGGCCTCTAAGTCT
+>gnl_Medtr3.5_Medtr8g022310.3
+---------ATGGCTAACGAA---------------------------------------
+------------------------------------------------------------
+------------------------------------------------GGAAACAAAAGC
+AATGATTTCTATGCAGTTTTGGGATTGAATAAGGAATGCTCTGATTCAGAGCTAAGGAAT
+GCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGTTGTTCAGCTTCAGGG------
+---AATGTGAAGTTTGTGGAAGAAGCTAAGAAGAAATTTCAGGCAATTCAAGAAGCCTAT
+TCT------------------GTTTTATCTGACTCGAACAAGAGATTAATGTACGACGTT
+GGAGTTTACGACAGT------------------------GATGATGACGAAAATGTAAGG
+CACTTGTTT---------------------------------------------------
+---------CACACCATTCATGAGTTGGGG------------------ACCCTCTTTTGC
+GTTATGTTTTGTTTCTTCATTTCCTTGAGG------------------------------
+------GGAGAG------------------------------------------------
+---------------------------AAGAGAAGCAACCTT------------------
+------------------------------------AATTTAACCTTTTCACTTTCACAT
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+>gnl_Nelnu1.0_NNU_000115-RA
+---------ATGGAGGTGGAC---------------------------------------
+------------------------------------------------------------
+---------------------------------------------TCCCATCGATCATCT
+CCATCTTACTACACCATCCTTGGTGTAGATCAGAATTCCTCCGCTTCCGAGATACGCAAT
+GCTTACAGGAAGCTCGCGATGCAATGGCATCCAGACAAATGGACGAAAACTCCG------
+---------TCGCTCTTAGAGAAAGCCAAGAGTAAATTCCAGCAAATCCAGGAGGCTTAT
+TCGGGTGGGTTACTCGTTTTCATGTTATCGGATCAGGGGAAGAGAACACTGTATGATGTC
+GGTCTGTATGACCCGGACGAT---------------GAAACGAATGACGAGGTGGGGCTT
+CGCAGATTT------CATGCAGGAGATGATATCTCTCATGAACGATGT------------
+------GAAGAAACAGGAGAAGAAATACAGCTTGGAGGAACTACAGGAGATGTTAGTGGA
+AATGTCACAAGGGCTGGAGTT------GAAGATGGAGAGTGCTGGTGGTGTGTGGTTGTT
+AGATGGAGCTGCAGCCTCAAGGAG------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------GAGCTC
+AAAGAGGGCCAG------------------------------------------------
+------------ATGGGAATCATCAGCGAG---TCCGAC------GACGCT---------
+------------------------------------------------------------
+------------------------------GGACACGACACACCTTCTCTCCCCCACTTG
+CACGGTTCAGAGCTG---------------GAATTGTTAGGAAGAACCGGCTGTTGCAAT
+>contig_7
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------GAGAATGAGTGGTCTGGG
+GCTGAGTTTTTGAATGAAATGGCGGCAATGATGACTCAAAATAAATCCAATGAAAACGGA
+------ACCGGAACTTTTGAAGAACTGCAA------------------CAATTGTTCGAT
+GAAATGTTTCAGAGCGACATC------GAGTCC---------------------------
+---TTCAATGGTTGTTCTTCATCA------------------------------------
+------------TCCAATGAAACATGTAGC------------------------------
+------------------------------------------------------------
+---------------------------AACTCGAACAAGAGGAATTCCATT---GAGTCG
+AGCTCGGCTAAT------------------------------------------------
+TTCAGACCCGAAAATGGAAACGAAAGCGGC------------------------------
+---------------------------------------GAG---ATTAGCGGGAAGAAG
+AATACTAGGAAAGGTAAAGGTGACGNN---------------------------------
+------------------------------------------------------------
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/38889.faa	Mon Oct 30 08:56:01 2017 -0400
@@ -0,0 +1,14 @@
+>gnl_Mimgu1.0_PACid_17675619
+MAETKTKVLKFDAEEDVAVALAKYTAYLSEKYIKEKNSFSVVLSGGTLIDTLRKLVEFPYKDSVDWSKWLIFWVDERVVP
+LDHEDSNYLLAYRGFLSKVPIPPSNIYAINDKKSPEGAADDYEERIKNLVEEKTLPISDSGFPKFDLMLLGMGPDGHVAS
+LFPSHNQRYEKKRWVTFITDSPKPPPPRITFTFPVINSASDIAMVVTGAELADTTKKALGNEKHTLPPLPCTEVSAEREL
+TWFLDKDAASKL
+>gnl_Solly2.3_Solyc06g053200.2.1
+MATQKGKKTVLKFDSEEDVSKALAKYTAELSEKFIKQKGSFTVVLSGGSLIDTMRKLVEPPYKDSIDWSKWWIFWVDERV
+VPLGHDDSNYKLASDGFLSKVPIPSSNIYAINDKESPEGAAADYEARLKQLIESKVLPLSAITGFPKFDLMLLGMGPDGH
+VASLFPLHPHRHEKERLVTFITDSPKPPPPRITFTFPVINSASEIAMVVTGAELAHMVDVALGNAPPPDGIPPPCTEVSA
+EEELTWFLDKDAASELQTSR
+>contig_2
+XLSKVPIPSNNIYAINDKKSPEDAADDYENRLKELVSEKIIPVSTISGFPKFDLMLLGMGPDGHVASLFPSHMQRYEKEK
+WVTFITDSPKPPPSRITFTFPMINSASEIAMVVTGADLAGTTKIALGTTGNVKPGETPLPCTEVSAEGEVTWFLDKDAAS
+QLLNYVRFDD
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/38889.faa.aln	Mon Oct 30 08:56:01 2017 -0400
@@ -0,0 +1,18 @@
+>gnl_Mimgu1.0_PACid_17675619
+MAETKTK--VLKFDAEEDVAVALAKYTAYLSEKYIKEKNSFSVVLSGGTLIDTLRKLVEF
+PYKDSVDWSKWLIFWVDERVVPLDHEDSNYLLAYRGFLSKVPIPPSNIYAINDKKSPEGA
+ADDYEERIKNLVEEKTLPISD-SGFPKFDLMLLGMGPDGHVASLFPSHNQRYEKKRWVTF
+ITDSPKPPPPRITFTFPVINSASDIAMVVTGAELADTTKKALGNEKHTLP---PLPCTEV
+SAERELTWFLDKDAASKL--------
+>gnl_Solly2.3_Solyc06g053200.2.1
+MATQKGKKTVLKFDSEEDVSKALAKYTAELSEKFIKQKGSFTVVLSGGSLIDTMRKLVEP
+PYKDSIDWSKWWIFWVDERVVPLGHDDSNYKLASDGFLSKVPIPSSNIYAINDKESPEGA
+AADYEARLKQLIESKVLPLSAITGFPKFDLMLLGMGPDGHVASLFPLHPHRHEKERLVTF
+ITDSPKPPPPRITFTFPVINSASEIAMVVTGAELAHMVDVALGNAP--PPDGIPPPCTEV
+SAEEELTWFLDKDAASEL----QTSR
+>contig_2
+------------------------------------------------------------
+------------------------------------XLSKVPIPSNNIYAINDKKSPEDA
+ADDYENRLKELVSEKIIPVSTISGFPKFDLMLLGMGPDGHVASLFPSHMQRYEKEKWVTF
+ITDSPKPPPSRITFTFPMINSASEIAMVVTGADLAGTTKIALGTTGNVKPGETPLPCTEV
+SAEGEVTWFLDKDAASQLLNYVRFDD
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/38889.fna	Mon Oct 30 08:56:01 2017 -0400
@@ -0,0 +1,30 @@
+>gnl_Mimgu1.0_PACid_17675619
+ATGGCCGAAACCAAAACAAAAGTACTGAAATTCGACGCGGAGGAAGATGTGGCCGTCGCTCTAGCAAAGTACACCGCCTA
+TCTCTCCGAAAAGTACATCAAGGAAAAGAATTCTTTCTCGGTGGTTCTCTCCGGCGGCACCCTAATAGATACACTCAGGA
+AACTAGTAGAGTTTCCATACAAGGATTCTGTGGATTGGTCGAAATGGCTGATATTTTGGGTTGACGAGAGAGTGGTTCCT
+CTTGATCATGAAGACAGCAACTACTTACTTGCATACCGTGGTTTTCTTTCAAAGGTACCTATTCCTCCAAGCAACATTTA
+CGCAATCAACGACAAGAAGTCTCCGGAAGGTGCAGCCGATGATTACGAGGAGCGTATCAAGAATCTGGTCGAGGAAAAAA
+CCCTACCTATTTCAGACAGTGGCTTCCCTAAATTCGACCTTATGCTTCTCGGAATGGGGCCCGATGGCCACGTGGCGTCT
+CTTTTCCCCTCTCACAATCAACGGTACGAAAAGAAACGGTGGGTGACATTCATAACTGACTCTCCCAAACCGCCGCCACC
+TAGGATCACTTTCACATTCCCAGTCATCAACTCTGCTTCGGACATTGCAATGGTGGTCACTGGTGCTGAGCTGGCGGATA
+CTACGAAGAAAGCATTGGGAAACGAGAAGCATACTCTTCCTCCTCTTCCTTGTACTGAAGTTTCGGCTGAGAGAGAGCTC
+ACTTGGTTCTTGGACAAAGATGCTGCTTCTAAACTG
+>gnl_Solly2.3_Solyc06g053200.2.1
+ATGGCAACCCAGAAAGGGAAGAAGACGGTGCTAAAATTCGACTCCGAAGAAGATGTATCAAAGGCACTTGCTAAATACAC
+TGCTGAGCTATCGGAAAAATTCATCAAACAAAAAGGTTCTTTCACTGTTGTGCTCTCTGGTGGTTCTCTTATCGATACCA
+TGAGGAAATTGGTAGAGCCGCCGTACAAAGACTCAATTGATTGGTCGAAATGGTGGATTTTTTGGGTAGACGAAAGAGTG
+GTTCCTCTAGGTCACGATGATAGCAATTATAAACTTGCTTCGGATGGGTTTCTTTCTAAGGTTCCGATCCCCTCTTCTAA
+CATTTATGCGATTAATGACAAGGAGTCACCTGAGGGTGCAGCTGCTGATTACGAAGCTCGTCTGAAACAATTGATTGAGA
+GCAAAGTTCTTCCGTTATCAGCAATTACTGGATTCCCCAAATTTGATCTTATGCTATTAGGTATGGGGCCAGATGGACAT
+GTAGCGTCTTTGTTTCCTTTGCATCCTCACCGCCACGAGAAGGAGCGGCTGGTCACCTTCATTACAGACTCACCAAAACC
+TCCTCCACCAAGGATTACTTTCACCTTTCCGGTAATTAATTCGGCTTCAGAGATAGCAATGGTGGTCACAGGAGCAGAGT
+TAGCTCATATGGTTGATGTCGCTTTGGGTAATGCGCCTCCTCCTGATGGAATTCCTCCCCCTTGTACTGAGGTTTCAGCT
+GAAGAGGAACTGACCTGGTTTTTAGACAAGGATGCTGCATCAGAACTACAGACCTCTAGA
+>contig_2
+NNCCTTTCCAAGGTACCCATCCCATCCAACAACATATATGCTATAAATGATAAGAAGTCCCCGGAAGATGCAGCAGACGA
+CTACGAAAACCGCCTCAAGGAACTCGTCTCCGAAAAAATCATACCCGTTTCAACCATTAGCGGGTTCCCGAAGTTCGACC
+TCATGTTGCTTGGAATGGGGCCCGACGGCCATGTGGCCTCTCTTTTCCCTTCTCACATGCAACGCTATGAGAAGGAGAAA
+TGGGTCACTTTCATAACTGACTCTCCCAAACCGCCTCCGTCGAGAATCACTTTTACGTTTCCGATGATCAACTCGGCTTC
+GGAGATCGCTATGGTGGTTACCGGGGCTGATTTGGCTGGTACAACTAAGATAGCATTGGGTACTACGGGCAATGTTAAGC
+CGGGTGAGACTCCTTTGCCTTGTACTGAAGTTTCGGCTGAGGGAGAGGTTACTTGGTTCTTGGACAAAGATGCTGCTTCA
+CAACTGTTAAATTATGTGCGCTTTGATGAT
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/38889.fna.aln	Mon Oct 30 08:56:01 2017 -0400
@@ -0,0 +1,45 @@
+>gnl_Mimgu1.0_PACid_17675619
+ATGGCCGAAACCAAAACAAAA------GTACTGAAATTCGACGCGGAGGAAGATGTGGCC
+GTCGCTCTAGCAAAGTACACCGCCTATCTCTCCGAAAAGTACATCAAGGAAAAGAATTCT
+TTCTCGGTGGTTCTCTCCGGCGGCACCCTAATAGATACACTCAGGAAACTAGTAGAGTTT
+CCATACAAGGATTCTGTGGATTGGTCGAAATGGCTGATATTTTGGGTTGACGAGAGAGTG
+GTTCCTCTTGATCATGAAGACAGCAACTACTTACTTGCATACCGTGGTTTTCTTTCAAAG
+GTACCTATTCCTCCAAGCAACATTTACGCAATCAACGACAAGAAGTCTCCGGAAGGTGCA
+GCCGATGATTACGAGGAGCGTATCAAGAATCTGGTCGAGGAAAAAACCCTACCTATTTCA
+GAC---AGTGGCTTCCCTAAATTCGACCTTATGCTTCTCGGAATGGGGCCCGATGGCCAC
+GTGGCGTCTCTTTTCCCCTCTCACAATCAACGGTACGAAAAGAAACGGTGGGTGACATTC
+ATAACTGACTCTCCCAAACCGCCGCCACCTAGGATCACTTTCACATTCCCAGTCATCAAC
+TCTGCTTCGGACATTGCAATGGTGGTCACTGGTGCTGAGCTGGCGGATACTACGAAGAAA
+GCATTGGGAAACGAGAAGCATACTCTTCCT---------CCTCTTCCTTGTACTGAAGTT
+TCGGCTGAGAGAGAGCTCACTTGGTTCTTGGACAAAGATGCTGCTTCTAAACTG------
+------------------
+>gnl_Solly2.3_Solyc06g053200.2.1
+ATGGCAACCCAGAAAGGGAAGAAGACGGTGCTAAAATTCGACTCCGAAGAAGATGTATCA
+AAGGCACTTGCTAAATACACTGCTGAGCTATCGGAAAAATTCATCAAACAAAAAGGTTCT
+TTCACTGTTGTGCTCTCTGGTGGTTCTCTTATCGATACCATGAGGAAATTGGTAGAGCCG
+CCGTACAAAGACTCAATTGATTGGTCGAAATGGTGGATTTTTTGGGTAGACGAAAGAGTG
+GTTCCTCTAGGTCACGATGATAGCAATTATAAACTTGCTTCGGATGGGTTTCTTTCTAAG
+GTTCCGATCCCCTCTTCTAACATTTATGCGATTAATGACAAGGAGTCACCTGAGGGTGCA
+GCTGCTGATTACGAAGCTCGTCTGAAACAATTGATTGAGAGCAAAGTTCTTCCGTTATCA
+GCAATTACTGGATTCCCCAAATTTGATCTTATGCTATTAGGTATGGGGCCAGATGGACAT
+GTAGCGTCTTTGTTTCCTTTGCATCCTCACCGCCACGAGAAGGAGCGGCTGGTCACCTTC
+ATTACAGACTCACCAAAACCTCCTCCACCAAGGATTACTTTCACCTTTCCGGTAATTAAT
+TCGGCTTCAGAGATAGCAATGGTGGTCACAGGAGCAGAGTTAGCTCATATGGTTGATGTC
+GCTTTGGGTAATGCGCCT------CCTCCTGATGGAATTCCTCCCCCTTGTACTGAGGTT
+TCAGCTGAAGAGGAACTGACCTGGTTTTTAGACAAGGATGCTGCATCAGAACTA------
+------CAGACCTCTAGA
+>contig_2
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------NNCCTTTCCAAG
+GTACCCATCCCATCCAACAACATATATGCTATAAATGATAAGAAGTCCCCGGAAGATGCA
+GCAGACGACTACGAAAACCGCCTCAAGGAACTCGTCTCCGAAAAAATCATACCCGTTTCA
+ACCATTAGCGGGTTCCCGAAGTTCGACCTCATGTTGCTTGGAATGGGGCCCGACGGCCAT
+GTGGCCTCTCTTTTCCCTTCTCACATGCAACGCTATGAGAAGGAGAAATGGGTCACTTTC
+ATAACTGACTCTCCCAAACCGCCTCCGTCGAGAATCACTTTTACGTTTCCGATGATCAAC
+TCGGCTTCGGAGATCGCTATGGTGGTTACCGGGGCTGATTTGGCTGGTACAACTAAGATA
+GCATTGGGTACTACGGGCAATGTTAAGCCGGGTGAGACTCCTTTGCCTTGTACTGAAGTT
+TCGGCTGAGGGAGAGGTTACTTGGTTCTTGGACAAAGATGCTGCTTCACAACTGTTAAAT
+TATGTGCGCTTTGATGAT
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/39614.faa	Mon Oct 30 08:56:01 2017 -0400
@@ -0,0 +1,19 @@
+>gnl_Orysa6.0_PACid_16878968
+MSHMEAFQNVVLLHKANSNSTLEDISSLSAASCCSLDQLLACVEGEAQKIFGDIQNLLADHRSEVAHFTQELRESFRISL
+DRTKDMSSFILGLFDKYVEETSKLQSHSNHTHEAQVKSLEDFQKAYEEQSKSEEQKLLADITSLVSKHVTRQRELVGGRL
+NSLGDAARGNKAFLDEHTSAMEVVTKDAKRKWEMFAEQAENDCKVGSNFSAAKHCRMETILQECACTVDTAAQQWKASHA
+TVNDLCRKQIAEVEALVRSAIETNEQHEAEIASSRATAEEHASNSSKDLLQDVDNMLQEARNSSSRVVSTVEAHLGESQH
+LQESHSSHTAGINTHADNAFQSSYKDYEPTGETPVRSEPEVPSKDAIESLRAMPMESLMDEFRENHPYEPSKDRRPSLIP
+RSPLATINN
+>gnl_Phoda3.0_PDK_30s1023721g001
+VNQKMMKCTLIKDLYGEIERLKAEVYAAREKVGVYIPKERYHQEESERKAMAEQIEQMGVLLENNQKQIEDLQERYNTQL
+QQSDDLSKKLDATEILCVSLSKKLDATEKSLEHTSKLLAAAREDLKQAQYTLKEKDFVISEQRKAAREDKLNTANRSIVN
+NFRADLATRVGTLCNTVVASLDRQNEHLQSVEKLCQSSLDFHDKAVSELKRKVSASRALYTSHMEALQNVVRLHKASSNA
+SLEEMSSMISANTCSLDQLLALGQSEADLIFSDLQSILSIHRGEIANFTRELREKFQVNLDRTKEMSNFILELLEKIGKG
+TKEFQNDSTLVHEAQVKSIGDFQKAYEVEVRLTGLGDAARDSKAIMDNHASSMDIVTTDAKRKWEEYSKQAEQDSEDGSN
+FSAAKHCRMELMLQQCVNSVDATSQQWKKTHASVSEMSSKHVAEIEALVRSAIESNDQHDAEVASARMAAEEDVAKNSKD
+VLQHFDTVIDHERNSAAGVMAAVEAHSATLHKLQEEQSSQATEINSHAEDTFQNTYMDYEPTGETPTRSEPDIPSRGTIE
+SLRAMPIEALLEEFRENHPYESKEPKPSLIPRSPLVQLN
+>contig_3
+XVDEGVVVAGLSEQEKASVSEILTTARAHSETIENLKRDHSQQVSCIEQHTNDTFRQKYMDYEPTGSTPVRSEPDIPSKG
+TIESLRAMPIDALEEEFRENHSYESAVTGKELMPSVTTRAPFSQIN
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/39614.faa.aln	Mon Oct 30 08:56:01 2017 -0400
@@ -0,0 +1,36 @@
+>gnl_Orysa6.0_PACid_16878968
+M-----------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------------------------------SHMEAFQNVVLLHKANSNS
+TLEDISSLSAASCCSLDQLLACVEGEAQKIFGDIQNLLADHRSEVAHFTQELRESFRISL
+DRTKDMSSFILGLFDKYVEETSKLQSHSNHTHEAQVKSLEDFQKAYEEQSKSEEQKLLAD
+ITSLVSKHVTRQRELVGGRLNSLGDAARGNKAFLDEHTSAMEVVTKDAKRKWEMFAEQAE
+NDCKVGSNFSAAKHCRMETILQECACTVDTAAQQWKASHATVNDLCRKQIAEVEALVRSA
+IETNEQHEAEIASSRATAEEHASNSSKDLLQDVDNMLQEARNSSSRVVSTVEAHLGESQH
+LQESHSSHTAGINTHADNAFQSSYKDYEPTGETPVRSEPEVPSKDAIESLRAMPMESLMD
+EFRENHPYEPS---KDRRPSLIPRSPLATINN
+>gnl_Phoda3.0_PDK_30s1023721g001
+VNQKMMKCTLIKDLYGEIERLKAEVYAAREKVGVYIPKERYHQEESERKAMAEQIEQMGV
+LLENNQKQIEDLQERYNTQLQQSDDLSKKLDATEILCVSLSKKLDATEKSLEHTSKLLAA
+AREDLKQAQYTLKEKDFVISEQRKAAREDKLNTANRSIVNNFRADLATRVGTLCNTVVAS
+LDRQNEHLQSVEKLCQSSLDFHDKAVSELKRKVSASRALYTSHMEALQNVVRLHKASSNA
+SLEEMSSMISANTCSLDQLLALGQSEADLIFSDLQSILSIHRGEIANFTRELREKFQVNL
+DRTKEMSNFILELLEKIGKGTKEFQNDSTLVHEAQVKSIGDFQKAYE-------------
+---------------VEVRLTGLGDAARDSKAIMDNHASSMDIVTTDAKRKWEEYSKQAE
+QDSEDGSNFSAAKHCRMELMLQQCVNSVDATSQQWKKTHASVSEMSSKHVAEIEALVRSA
+IESNDQHDAEVASARMAAEEDVAKNSKDVLQHFDTVIDHERNSAAGVMAAVEAHSATLHK
+LQEEQSSQATEINSHAEDTFQNTYMDYEPTGETPTRSEPDIPSRGTIESLRAMPIEALLE
+EFRENHPYES----KEPKPSLIPRSPLVQLN-
+>contig_3
+X-----------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------VD------------------------EGVV---
+--------------------------------VAGLSEQEKASVSEILTTARAHSETIEN
+LKRDHSQQVSCIEQHTNDTFRQKYMDYEPTGSTPVRSEPDIPSKGTIESLRAMPIDALEE
+EFRENHSYESAVTGKELMPSVTTRAPFSQIN-
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/39614.fna	Mon Oct 30 08:56:01 2017 -0400
@@ -0,0 +1,47 @@
+>gnl_Orysa6.0_PACid_16878968
+ATGTCACATATGGAAGCCTTCCAAAATGTTGTGCTCCTGCATAAAGCAAATTCAAATTCTACACTAGAGGATATATCATC
+CCTATCTGCTGCAAGCTGTTGCAGCCTTGATCAGCTTCTAGCTTGTGTCGAGGGAGAGGCACAGAAGATATTTGGTGATA
+TCCAGAATTTGCTAGCTGATCATCGAAGCGAAGTGGCACATTTCACTCAAGAGTTGCGGGAGAGTTTCCGCATTAGCTTG
+GATAGGACGAAGGACATGTCTAGTTTCATCCTTGGGTTGTTCGATAAGTATGTGGAGGAAACTTCGAAGTTGCAGAGCCA
+CTCCAATCACACACATGAAGCACAAGTCAAAAGCCTTGAAGATTTCCAGAAGGCTTATGAGGAGCAATCAAAATCAGAAG
+AACAAAAGCTTCTGGCGGACATCACCAGTTTGGTTTCTAAACACGTTACTCGACAACGAGAACTGGTGGGTGGTAGACTA
+AACTCTCTTGGTGACGCCGCTCGTGGAAACAAAGCATTTTTGGATGAGCACACGTCCGCCATGGAGGTGGTCACGAAGGA
+CGCCAAGAGAAAGTGGGAAATGTTTGCAGAGCAGGCAGAGAATGACTGCAAAGTTGGGTCCAACTTCTCTGCAGCTAAGC
+ATTGTCGCATGGAAACCATTCTGCAGGAATGTGCATGCACCGTCGACACTGCTGCTCAACAATGGAAAGCATCACATGCA
+ACTGTTAACGATCTATGCAGAAAACAAATAGCTGAAGTTGAAGCACTCGTCAGGAGTGCAATCGAAACCAACGAGCAGCA
+CGAAGCAGAGATTGCATCTTCCCGTGCCACGGCCGAGGAGCATGCGTCCAACAGCAGCAAGGACCTACTCCAAGATGTTG
+ACAATATGCTGCAGGAGGCGCGCAATTCGTCGTCGAGAGTGGTGTCGACGGTGGAAGCTCATTTGGGAGAGAGCCAGCAT
+CTACAGGAGAGCCACTCCAGCCATACCGCCGGCATCAACACCCACGCCGACAACGCTTTCCAGAGCAGCTACAAGGACTA
+CGAGCCGACCGGCGAAACTCCGGTGAGGTCGGAGCCGGAGGTGCCGAGCAAAGACGCGATCGAGTCGCTGCGAGCGATGC
+CGATGGAGTCCCTGATGGACGAGTTCCGCGAGAACCACCCCTACGAGCCGAGCAAGGACCGCAGGCCATCGCTCATCCCT
+CGCTCGCCGCTCGCCACCATCAACAAC
+>gnl_Phoda3.0_PDK_30s1023721g001
+GTAAACCAAAAAATGATGAAATGTACATTAATCAAAGATCTCTATGGAGAAATTGAGCGTCTAAAAGCAGAGGTGTATGC
+TGCTCGTGAGAAAGTTGGAGTTTACATACCAAAAGAACGCTACCATCAAGAAGAGAGCGAACGGAAGGCAATGGCAGAAC
+AAATTGAACAAATGGGGGTCTTGCTCGAAAACAATCAAAAGCAAATTGAGGATCTACAAGAAAGGTATAATACTCAACTT
+CAACAGTCTGATGACCTGAGCAAAAAGCTTGATGCCACCGAGATTCTCTGTGTTTCTCTGAGCAAAAAGCTTGATGCCAC
+CGAGAAAAGTTTGGAGCACACTAGCAAGTTATTGGCTGCTGCCAGAGAAGATCTGAAGCAAGCTCAGTATACTCTGAAGG
+AGAAAGATTTTGTTATATCAGAGCAGAGGAAAGCAGCTAGAGAAGACAAACTGAATACTGCCAACAGATCTATTGTGAAC
+AATTTTCGGGCTGATCTTGCAACAAGGGTTGGAACACTTTGTAATACTGTTGTTGCATCCTTGGATCGGCAAAATGAACA
+CCTTCAGTCTGTTGAGAAACTATGTCAATCTAGCCTTGATTTCCATGACAAGGCAGTATCAGAGCTGAAAAGGAAAGTGT
+CAGCTTCAAGAGCTTTGTATACTTCCCATATGGAAGCACTACAAAATGTAGTGCGTTTGCATAAGGCAAGCAGCAATGCC
+AGCTTAGAAGAGATGTCATCCATGATTTCTGCCAATACCTGCTCTCTTGATCAGTTACTTGCCTTGGGGCAAAGCGAAGC
+AGATCTGATTTTTAGTGATCTGCAAAGCATATTGTCAATTCACCGAGGAGAGATTGCAAATTTCACCCGTGAACTTCGTG
+AGAAATTTCAAGTTAATTTGGATCGGACAAAGGAGATGTCCAATTTTATTCTTGAGCTGCTTGAAAAGATAGGGAAGGGA
+ACAAAAGAATTTCAGAATGACTCAACTTTGGTACATGAGGCTCAGGTGAAGAGCATTGGTGATTTCCAAAAGGCATATGA
+GGTGGAAGTGAGGCTCACTGGACTGGGAGATGCTGCTCGAGATAGCAAAGCAATTATGGATAACCATGCATCATCAATGG
+ACATCGTCACAACTGATGCTAAGAGGAAGTGGGAAGAATATTCCAAGCAGGCAGAGCAAGATTCAGAGGACGGTTCTAAC
+TTTTCAGCAGCAAAACATTGTCGCATGGAACTCATGCTCCAACAGTGTGTAAACTCTGTTGATGCTACTTCTCAACAGTG
+GAAGAAGACACATGCATCTGTTAGTGAGATGAGCAGCAAACACGTTGCTGAAATTGAAGCACTTGTAAGGAGTGCCATTG
+AGAGCAATGATCAGCATGATGCTGAGGTTGCTTCAGCAAGAATGGCAGCAGAAGAGGATGTAGCGAAAAATAGCAAAGAT
+GTTCTTCAGCATTTTGATACTGTGATTGATCATGAGCGCAACTCAGCCGCTGGAGTGATGGCAGCAGTCGAAGCTCACTC
+AGCAACCCTGCATAAACTGCAAGAGGAACAATCAAGCCAGGCAACAGAGATTAATAGCCATGCGGAGGACACATTCCAAA
+ACACCTACATGGACTATGAACCAACGGGAGAAACCCCAACAAGGTCGGAACCAGATATACCAAGCAGGGGAACAATCGAA
+TCTCTTCGAGCCATGCCGATAGAAGCCCTCCTTGAAGAGTTCCGGGAGAACCATCCATACGAGTCCAAGGAGCCCAAACC
+GTCTCTCATACCACGCTCTCCACTCGTCCAGCTCAAC
+>contig_3
+NNTGTGGATGAAGGAGTTGTTGTTGCTGGCTTGTCAGAGCAGGAGAAGGCATCTGTTTCTGAAATTCTGACAACTGCTAG
+AGCTCATTCAGAAACAATTGAGAACCTTAAGAGAGATCATTCCCAGCAGGTATCCTGTATCGAACAGCACACGAATGATA
+CTTTCAGGCAAAAATACATGGATTACGAGCCTACAGGGTCCACGCCAGTTAGGAGCGAGCCGGATATTCCCAGCAAAGGC
+ACAATAGAGTCACTTCGTGCCATGCCTATAGATGCACTTGAAGAAGAATTTCGAGAAAACCATTCATACGAATCTGCTGT
+TACAGGAAAGGAACTAATGCCGTCTGTTACGACTCGTGCACCATTTTCACAGATCAAC
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/39614.fna.aln	Mon Oct 30 08:56:01 2017 -0400
@@ -0,0 +1,99 @@
+>gnl_Orysa6.0_PACid_16878968
+ATG---------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---TCACATATGGAAGCCTTCCAAAATGTTGTGCTCCTGCATAAAGCAAATTCAAATTCT
+ACACTAGAGGATATATCATCCCTATCTGCTGCAAGCTGTTGCAGCCTTGATCAGCTTCTA
+GCTTGTGTCGAGGGAGAGGCACAGAAGATATTTGGTGATATCCAGAATTTGCTAGCTGAT
+CATCGAAGCGAAGTGGCACATTTCACTCAAGAGTTGCGGGAGAGTTTCCGCATTAGCTTG
+GATAGGACGAAGGACATGTCTAGTTTCATCCTTGGGTTGTTCGATAAGTATGTGGAGGAA
+ACTTCGAAGTTGCAGAGCCACTCCAATCACACACATGAAGCACAAGTCAAAAGCCTTGAA
+GATTTCCAGAAGGCTTATGAGGAGCAATCAAAATCAGAAGAACAAAAGCTTCTGGCGGAC
+ATCACCAGTTTGGTTTCTAAACACGTTACTCGACAACGAGAACTGGTGGGTGGTAGACTA
+AACTCTCTTGGTGACGCCGCTCGTGGAAACAAAGCATTTTTGGATGAGCACACGTCCGCC
+ATGGAGGTGGTCACGAAGGACGCCAAGAGAAAGTGGGAAATGTTTGCAGAGCAGGCAGAG
+AATGACTGCAAAGTTGGGTCCAACTTCTCTGCAGCTAAGCATTGTCGCATGGAAACCATT
+CTGCAGGAATGTGCATGCACCGTCGACACTGCTGCTCAACAATGGAAAGCATCACATGCA
+ACTGTTAACGATCTATGCAGAAAACAAATAGCTGAAGTTGAAGCACTCGTCAGGAGTGCA
+ATCGAAACCAACGAGCAGCACGAAGCAGAGATTGCATCTTCCCGTGCCACGGCCGAGGAG
+CATGCGTCCAACAGCAGCAAGGACCTACTCCAAGATGTTGACAATATGCTGCAGGAGGCG
+CGCAATTCGTCGTCGAGAGTGGTGTCGACGGTGGAAGCTCATTTGGGAGAGAGCCAGCAT
+CTACAGGAGAGCCACTCCAGCCATACCGCCGGCATCAACACCCACGCCGACAACGCTTTC
+CAGAGCAGCTACAAGGACTACGAGCCGACCGGCGAAACTCCGGTGAGGTCGGAGCCGGAG
+GTGCCGAGCAAAGACGCGATCGAGTCGCTGCGAGCGATGCCGATGGAGTCCCTGATGGAC
+GAGTTCCGCGAGAACCACCCCTACGAGCCGAGC---------AAGGACCGCAGGCCATCG
+CTCATCCCTCGCTCGCCGCTCGCCACCATCAACAAC
+>gnl_Phoda3.0_PDK_30s1023721g001
+GTAAACCAAAAAATGATGAAATGTACATTAATCAAAGATCTCTATGGAGAAATTGAGCGT
+CTAAAAGCAGAGGTGTATGCTGCTCGTGAGAAAGTTGGAGTTTACATACCAAAAGAACGC
+TACCATCAAGAAGAGAGCGAACGGAAGGCAATGGCAGAACAAATTGAACAAATGGGGGTC
+TTGCTCGAAAACAATCAAAAGCAAATTGAGGATCTACAAGAAAGGTATAATACTCAACTT
+CAACAGTCTGATGACCTGAGCAAAAAGCTTGATGCCACCGAGATTCTCTGTGTTTCTCTG
+AGCAAAAAGCTTGATGCCACCGAGAAAAGTTTGGAGCACACTAGCAAGTTATTGGCTGCT
+GCCAGAGAAGATCTGAAGCAAGCTCAGTATACTCTGAAGGAGAAAGATTTTGTTATATCA
+GAGCAGAGGAAAGCAGCTAGAGAAGACAAACTGAATACTGCCAACAGATCTATTGTGAAC
+AATTTTCGGGCTGATCTTGCAACAAGGGTTGGAACACTTTGTAATACTGTTGTTGCATCC
+TTGGATCGGCAAAATGAACACCTTCAGTCTGTTGAGAAACTATGTCAATCTAGCCTTGAT
+TTCCATGACAAGGCAGTATCAGAGCTGAAAAGGAAAGTGTCAGCTTCAAGAGCTTTGTAT
+ACTTCCCATATGGAAGCACTACAAAATGTAGTGCGTTTGCATAAGGCAAGCAGCAATGCC
+AGCTTAGAAGAGATGTCATCCATGATTTCTGCCAATACCTGCTCTCTTGATCAGTTACTT
+GCCTTGGGGCAAAGCGAAGCAGATCTGATTTTTAGTGATCTGCAAAGCATATTGTCAATT
+CACCGAGGAGAGATTGCAAATTTCACCCGTGAACTTCGTGAGAAATTTCAAGTTAATTTG
+GATCGGACAAAGGAGATGTCCAATTTTATTCTTGAGCTGCTTGAAAAGATAGGGAAGGGA
+ACAAAAGAATTTCAGAATGACTCAACTTTGGTACATGAGGCTCAGGTGAAGAGCATTGGT
+GATTTCCAAAAGGCATATGAG---------------------------------------
+---------------------------------------------GTGGAAGTGAGGCTC
+ACTGGACTGGGAGATGCTGCTCGAGATAGCAAAGCAATTATGGATAACCATGCATCATCA
+ATGGACATCGTCACAACTGATGCTAAGAGGAAGTGGGAAGAATATTCCAAGCAGGCAGAG
+CAAGATTCAGAGGACGGTTCTAACTTTTCAGCAGCAAAACATTGTCGCATGGAACTCATG
+CTCCAACAGTGTGTAAACTCTGTTGATGCTACTTCTCAACAGTGGAAGAAGACACATGCA
+TCTGTTAGTGAGATGAGCAGCAAACACGTTGCTGAAATTGAAGCACTTGTAAGGAGTGCC
+ATTGAGAGCAATGATCAGCATGATGCTGAGGTTGCTTCAGCAAGAATGGCAGCAGAAGAG
+GATGTAGCGAAAAATAGCAAAGATGTTCTTCAGCATTTTGATACTGTGATTGATCATGAG
+CGCAACTCAGCCGCTGGAGTGATGGCAGCAGTCGAAGCTCACTCAGCAACCCTGCATAAA
+CTGCAAGAGGAACAATCAAGCCAGGCAACAGAGATTAATAGCCATGCGGAGGACACATTC
+CAAAACACCTACATGGACTATGAACCAACGGGAGAAACCCCAACAAGGTCGGAACCAGAT
+ATACCAAGCAGGGGAACAATCGAATCTCTTCGAGCCATGCCGATAGAAGCCCTCCTTGAA
+GAGTTCCGGGAGAACCATCCATACGAGTCC------------AAGGAGCCCAAACCGTCT
+CTCATACCACGCTCTCCACTCGTCCAGCTCAAC---
+>contig_3
+NNT---------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------GTGGAT---------------------------------
+---------------------------------------GAAGGAGTTGTT---------
+------------------------------------------------------------
+------------------------------------GTTGCTGGCTTGTCAGAGCAGGAG
+AAGGCATCTGTTTCTGAAATTCTGACAACTGCTAGAGCTCATTCAGAAACAATTGAGAAC
+CTTAAGAGAGATCATTCCCAGCAGGTATCCTGTATCGAACAGCACACGAATGATACTTTC
+AGGCAAAAATACATGGATTACGAGCCTACAGGGTCCACGCCAGTTAGGAGCGAGCCGGAT
+ATTCCCAGCAAAGGCACAATAGAGTCACTTCGTGCCATGCCTATAGATGCACTTGAAGAA
+GAATTTCGAGAAAACCATTCATACGAATCTGCTGTTACAGGAAAGGAACTAATGCCGTCT
+GTTACGACTCGTGCACCATTTTCACAGATCAAC---
--- a/utils.py	Wed Oct 25 11:27:00 2017 -0400
+++ b/utils.py	Mon Oct 30 08:56:01 2017 -0400
@@ -54,29 +54,3 @@
 
 def stop_err(msg):
     sys.exit(msg)
-
-
-def write_html_output(output, title, dir):
-    with open(output, 'w') as fh:
-        dir_items = sorted(os.listdir(dir))
-        # Directories can only contain either files or directories,
-        # but not both.
-        if len(dir_items) > 0:
-            item_path = os.path.join(dir, dir_items[0])
-            if os.path.isdir(item_path):
-                header = 'Directories'
-            else:
-                header = 'Datasets'
-        else:
-            header = ''
-        fh.write('<html><head><h3>%s: %d items</h3></head>\n' % (title, len(dir_items)))
-        fh.write('<body><p/><table cellpadding="2">\n')
-        fh.write('<tr><b>%s</th></b>\n' % header)
-        for index, fname in enumerate(dir_items):
-            if index % 2 == 0:
-                bgcolor = '#D8D8D8'
-            else:
-                bgcolor = '#FFFFFF'
-            link = '<a href="%s" type="text/plain">%s</a>\n' % (fname, fname)
-            fh.write('<tr bgcolor="%s"><td>%s</td></tr>\n' % (bgcolor, link))
-        fh.write('</table></body></html>\n')