Mercurial > repos > greg > gene_family_aligner

changeset 23:4bc180041705 draft

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Uploaded
author greg
date Mon, 01 May 2017 14:02:13 -0400
parents a42b4450fd2a
children 6d34db10765c
files gene_family_aligner.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/gene_family_aligner.xml	Mon May 01 11:14:24 2017 -0400
+++ b/gene_family_aligner.xml	Mon May 01 14:02:13 2017 -0400
@@ -139,12 +139,12 @@
 
  * **Classified orthogroup fasta files** - orthogroup fasta files produced by the GeneFamilyClassifier tool selected from your history.  Depending on how the GeneFamilyClassifier tool was exectured, these could either be proteins or proteins and their corresponding coding sequences.
 
- * **Codon alignments** - select 'Yes' to create codon multiple sequence alignments.  This option requires protein and their corresponding coding sequences to be provided as input data.
-
  * **Multiple sequence alignment method** - method for estimating orthogroup multiple sequence alignments.  PlantTribes estimates alignments using either MAFFT's L-INS-i algorithm or the divide and conquer approach implemented in the PASTA pipeline for large alignments.
 
   - **PASTA iteration limit** - number of PASTA iterations. By default, PASTA performs 3 iterations.
 
+ * **Codon alignments** - select 'Yes' to create codon multiple sequence alignments.  This option requires protein and their corresponding coding sequences to be provided as input data.
+
 **Other options**
 
  * **Alignment post-processing configuration** - select 'Yes' to enable multiple sequence alignment post-processing configuration options.