Mercurial > repos > greg > gene_family_aligner

changeset 32:14af615b80b4 draft

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Uploaded
author greg
date Mon, 22 May 2017 15:19:10 -0400
parents 5691bc0a32d2
children f61d568666f1
files gene_family_aligner.xml
diffstat 1 files changed, 6 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/gene_family_aligner.xml	Mon May 15 08:26:23 2017 -0400
+++ b/gene_family_aligner.xml	Mon May 22 15:19:10 2017 -0400
@@ -102,22 +102,22 @@
         <expand macro="cond_remove_gappy_sequences" />
     </inputs>
     <outputs>
-        <data name="output_aln" format="ptalign" label="Aligned gene family sequences on ${on_string}">
+        <data name="output_aln" format="ptalign" label="${tool.name} (aligned gene family sequences) on ${on_string}">
             <filter>(input_format_cond['input_format'] == 'ptortho' or (input_format_cond['input_format'] == 'ptorthocs' and input_format_cond['codon_alignments'] == 'no')) and remove_gappy_sequences_cond['remove_gappy_sequences'] == 'no'</filter>
         </data>
-        <data name="output_aln_ca" format="ptalignca" label="Aligned gene family sequences with codon alignments on ${on_string}">
+        <data name="output_aln_ca" format="ptalignca" label="${tool.name} (aligned gene family sequences with codon alignments) on ${on_string}">
             <filter>(input_format_cond['input_format'] == 'ptortho' or (input_format_cond['input_format'] == 'ptorthocs' and input_format_cond['codon_alignments'] == 'yes')) and remove_gappy_sequences_cond['remove_gappy_sequences'] == 'no'</filter>
         </data>
-        <data name="output_aln_filtered" format="ptalignfiltered" label="Filtered aligned gene family sequences on ${on_string}">
+        <data name="output_aln_filtered" format="ptalignfiltered" label="${tool.name} (filtered aligned gene family sequences) on ${on_string}">
             <filter>(input_format_cond['input_format'] == 'ptortho' or (input_format_cond['input_format'] == 'ptorthocs' and input_format_cond['codon_alignments'] == 'no')) and (remove_gappy_sequences_cond['remove_gappy_sequences'] == 'yes' and remove_gappy_sequences_cond['remove_sequences_with_gaps_cond']['remove_sequences_with_gaps'] == 'yes')</filter>
         </data>
-        <data name="output_aln_filtered_ca" format="ptalignfilteredca" label="Filtered aligned gene family sequences with codon alignments on ${on_string}">
+        <data name="output_aln_filtered_ca" format="ptalignfilteredca" label="${tool.name} (filtered aligned gene family sequences with codon alignments) on ${on_string}">
             <filter>(input_format_cond['input_format'] == 'ptortho' or (input_format_cond['input_format'] == 'ptorthocs' and input_format_cond['codon_alignments'] == 'yes')) and (remove_gappy_sequences_cond['remove_gappy_sequences'] == 'yes' and remove_gappy_sequences_cond['remove_sequences_with_gaps_cond']['remove_sequences_with_gaps'] == 'yes')</filter>
         </data>
-        <data name="output_aln_trimmed" format="ptaligntrimmed" label="Trimmed aligned gene family sequences on ${on_string}">
+        <data name="output_aln_trimmed" format="ptaligntrimmed" label="${tool.name} (trimmed aligned gene family sequences) on ${on_string}">
             <filter>(input_format_cond['input_format'] == 'ptortho' or (input_format_cond['input_format'] == 'ptorthocs' and input_format_cond['codon_alignments'] == 'no')) and (remove_gappy_sequences_cond['remove_gappy_sequences'] == 'yes' and remove_gappy_sequences_cond['remove_sequences_with_gaps_cond']['remove_sequences_with_gaps'] == 'no')</filter>
         </data>
-        <data name="output_aln_trimmed_ca" format="ptaligntrimmedca" label="Trimmed aligned gene family sequences with codon alignments on ${on_string}">
+        <data name="output_aln_trimmed_ca" format="ptaligntrimmedca" label="${tool.name} (trimmed aligned gene family sequences with codon alignments) on ${on_string}">
             <filter>(input_format_cond['input_format'] == 'ptortho' or (input_format_cond['input_format'] == 'ptorthocs' and input_format_cond['codon_alignments'] == 'yes')) and (remove_gappy_sequences_cond['remove_gappy_sequences'] == 'yes' and remove_gappy_sequences_cond['remove_sequences_with_gaps_cond']['remove_sequences_with_gaps'] == 'no')</filter>
         </data>
     </outputs>