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comparison fast_fiber_tracking.xml @ 0:4e3d4331fa58 draft

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author greg
date Tue, 07 Nov 2017 13:48:48 -0500
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1 <tool id="fast_fiber_tracking" name="Perform fast fiber tracking" version="0.13.0">
2 <description>using constrained spherical deconvolution </description>
3 <requirements>
4 <requirement type="package" version="0.13.0">dipy</requirement>
5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[
7 python '$__tool_directory__/fast_fiber_tracking.py'
8 --drmi_dataset $drmi_dataset
9 --output_csd_direction_field '$output_csd_direction_field'
10 --output_det_streamlines '$output_det_streamlines'
11 --output_fa_map '$output_fa_map'
12 ]]></command>
13 <inputs>
14 <param name="drmi_dataset" type="select" label="dRMI dataset">
15 <option value="stanford_hardi" selected="true">stanford_hardi</option>
16 <option value="sherbrooke_3shell">sherbrooke_3shell</option>
17 </param>
18 </inputs>
19 <outputs>
20 <data name="output_csd_direction_field" format="png" label="${tool.name}: CSD direction field" />
21 <data name="output_det_streamlines" format="png" label="${tool.name}: streamlines" />
22 <data name="output_fa_map" format="nifti1" label="${tool.name}: fractional anisotropic" />
23 </outputs>
24 <tests>
25 <test>
26 </test>
27 </tests>
28 <help>
29 **What it does**
30
31 Performs fast fiber tracking using constrained spherical deconvolution (CSD) for local reconstruction and generates
32 deterministic streamlines using the fiber directions (peaks) from CSD and fractional anisotropic (FA) from DTI as a
33 stopping criteria for the tracking.
34
35 -----
36
37 **Options**
38
39 </help>
40 <citations>
41 </citations>
42 </tool>