Mercurial > repos > greg > extract_genomic_dna

changeset 19:b212210c1808 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Thu, 03 Mar 2016 14:57:26 -0500
parents ec35e8d25958
children 5e839bb29ba9
files extract_genomic_dna.xml
diffstat 1 files changed, 6 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/extract_genomic_dna.xml	Thu Mar 03 14:52:47 2016 -0500
+++ b/extract_genomic_dna.xml	Thu Mar 03 14:57:26 2016 -0500
@@ -186,13 +186,13 @@
 **What it does**
 
 This tool uses coordinate, strand, and build information to fetch genomic DNAs in FASTA or interval format.
-If the output format is FASTA, the header format can be specified.
 
-Selecting the **bedtools getfasta default** option produces a FASTA heder formatted like the default header
-produced the the bedtools getfasta tool, and the "force strandedness" option is assumed.  If the input data
-includes a strand column and the strand is '+' or '-', it is included in the header.  If the input data includes
-a strand column and the value of strand is anything but '+' or '-', a '.' is included in the header.  If the
-input data does not include a strand column, a '.' is included in the header.
+If the output format is FASTA, the header format can be specified.  Selecting the **bedtools getfasta default**
+option produces a FASTA header formatted like the default header produced the the bedtools getfasta tool, and
+the "force strandedness" option is assumed.  If the input data includes a strand column and the strand is '+'
+or '-', it is included in the header.  If the input data includes a strand column and the value is anything but
+'+' or '-', a '.' is included in the header.  If the input data does not include a strand column, a '.' is included
+in the header.
 
 An example FASTA header produced by selecting this option is: