# HG changeset patch # User greg # Date 1457035046 18000 # Node ID b212210c18087689f69f3aedbe1f501323c8c8f8 # Parent ec35e8d25958babaa54714a6c46beb618f676b57 Uploaded diff -r ec35e8d25958 -r b212210c1808 extract_genomic_dna.xml --- a/extract_genomic_dna.xml Thu Mar 03 14:52:47 2016 -0500 +++ b/extract_genomic_dna.xml Thu Mar 03 14:57:26 2016 -0500 @@ -186,13 +186,13 @@ **What it does** This tool uses coordinate, strand, and build information to fetch genomic DNAs in FASTA or interval format. -If the output format is FASTA, the header format can be specified. -Selecting the **bedtools getfasta default** option produces a FASTA heder formatted like the default header -produced the the bedtools getfasta tool, and the "force strandedness" option is assumed. If the input data -includes a strand column and the strand is '+' or '-', it is included in the header. If the input data includes -a strand column and the value of strand is anything but '+' or '-', a '.' is included in the header. If the -input data does not include a strand column, a '.' is included in the header. +If the output format is FASTA, the header format can be specified. Selecting the **bedtools getfasta default** +option produces a FASTA header formatted like the default header produced the the bedtools getfasta tool, and +the "force strandedness" option is assumed. If the input data includes a strand column and the strand is '+' +or '-', it is included in the header. If the input data includes a strand column and the value is anything but +'+' or '-', a '.' is included in the header. If the input data does not include a strand column, a '.' is included +in the header. An example FASTA header produced by selecting this option is: