Mercurial > repos > greg > extract_genomic_dna
diff extract_genomic_dna_utils.py @ 14:1a10864abc1f draft
Uploaded
author | greg |
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date | Wed, 02 Mar 2016 09:13:24 -0500 |
parents | 32c6057529a4 |
children | 030691e5cc86 |
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--- a/extract_genomic_dna_utils.py Wed Jan 20 07:37:31 2016 -0500 +++ b/extract_genomic_dna_utils.py Wed Mar 02 09:13:24 2016 -0500 @@ -292,6 +292,22 @@ stop_err('Error running faToTwoBit. ' + str(e)) +def get_description_field_delimiter(description_field_delimiter): + # Convert a word to an appropriate character. + if description_field_delimiter == 'underscore': + return '_' + if description_field_delimiter == 'semicolon': + return ';' + if description_field_delimiter == 'comma': + return ',' + if description_field_delimiter == 'tilda': + return '~' + if description_field_delimiter == 'vetical_bar': + return '|' + # Set the default to underscore. + return '_' + + def get_lines(feature): # Get feature's line(s). if isinstance(feature, GFFFeature):