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comparison dmri.xml @ 29:da507620bd74 draft

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author greg
date Thu, 30 Nov 2017 09:39:24 -0500
parents c1fba91da909
children e9bb4e93202a
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28:6e7ed2b633dc 29:da507620bd74
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.13.0">dipy</requirement> 4 <requirement type="package" version="0.13.0">dipy</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 python '$__tool_directory__/dmri.py' 7 python '$__tool_directory__/dmri.py'
8 --drmi_dataset_type '$drmi_dataset_type_cond.drmi_dataset_type'
8 --drmi_dataset $drmi_dataset 9 --drmi_dataset $drmi_dataset
9 --output_png '$output_png' 10 --output_png '$output_png'
10 --output_nifti1 '$output_nifti1' 11 --output_nifti1 '$output_nifti1'
11 --output_nifti1_extra_files '$output_nifti1.files_path' 12 --output_nifti1_extra_files '$output_nifti1.files_path'
12 &>/dev/null 13 &>/dev/null
13 ]]></command> 14 ]]></command>
14 <inputs> 15 <inputs>
16 <conditional name="drmi_dataset_type_cond">
17 <param name="drmi_dataset_type" type="select" label="Select download type">
18 <option value="dataset" selected="true">Dataset only</option>
19 <option value="dataset and label map">Dataset and label map</option>
20 </param>
21 <when option="dataset"/>
22 <when option="map"/>
23 </conditional>
15 <param name="drmi_dataset" type="select" label="dRMI dataset"> 24 <param name="drmi_dataset" type="select" label="dRMI dataset">
16 <option value="stanford_hardi" selected="true">stanford_hardi</option> 25 <option value="stanford_hardi" selected="true">stanford_hardi</option>
17 <option value="sherbrooke_3shell">sherbrooke_3shell</option> 26 <option value="sherbrooke_3shell">sherbrooke_3shell</option>
18 </param> 27 </param>
19 </inputs> 28 </inputs>
20 <outputs> 29 <outputs>
21 <data name="output_png" format="png" label="${tool.name}: middle axial slice without (left) and with (right) diffusion weighting" /> 30 <data name="output_png" format="png" label="${tool.name}: middle axial slice without (left) and with (right) diffusion weighting" />
22 <data name="output_nifti1" format="nifti1" label="${tool.name}: Nifti1 image" /> 31 <data name="output_nifti1" format="nifti1" label="${tool.name}: ($drmi_dataset_type) Nifti1 image" />
23 </outputs> 32 </outputs>
24 <tests> 33 <tests>
25 <test> 34 <test>
26 </test> 35 </test>
27 </tests> 36 </tests>