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comparison dmri.xml @ 40:1e2dad266344 draft

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author greg
date Thu, 30 Nov 2017 11:09:00 -0500
parents fd434b04f717
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39:24c3ca0fd7fa 40:1e2dad266344
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 python '$__tool_directory__/dmri.py' 7 python '$__tool_directory__/dmri.py'
8 --drmi_dataset_type '$drmi_dataset_type_cond.drmi_dataset_type' 8 --drmi_dataset_type '$drmi_dataset_type_cond.drmi_dataset_type'
9 --drmi_dataset $drmi_dataset 9 --drmi_dataset $drmi_dataset
10 --output_png '$output_png' 10 #if str($drmi_dataset) == "stanford_hardi":
11 --output_png '$output_png'
12 #end if
11 --output_nifti1 '$output_nifti1' 13 --output_nifti1 '$output_nifti1'
12 --output_nifti1_extra_files '$output_nifti1.files_path' 14 --output_nifti1_extra_files '$output_nifti1.files_path'
13 &>/dev/null 15 &>/dev/null
14 ]]></command> 16 ]]></command>
15 <inputs> 17 <inputs>
25 <option value="stanford_hardi" selected="true">stanford_hardi</option> 27 <option value="stanford_hardi" selected="true">stanford_hardi</option>
26 <option value="stanford_t1">stanford_t1</option> 28 <option value="stanford_t1">stanford_t1</option>
27 </param> 29 </param>
28 </inputs> 30 </inputs>
29 <outputs> 31 <outputs>
30 <data name="output_png" format="png" label="${tool.name}: middle axial slice without (left) and with (right) diffusion weighting" /> 32 <data name="output_png" format="png" label="${tool.name}: middle axial slice without (left) and with (right) diffusion weighting">
31 <data name="output_nifti1" format="nifti1" label="${tool.name}: ($drmi_dataset_type_cond['drmi_dataset_type']) Nifti1 image" /> 33 <filter>drmi_dataset == 'stanford_hardi'</filter>
34 </data>
35 <data name="output_nifti1" format="nifti1" label="dRMI dataset $drmi_dataset: ($drmi_dataset_type_cond['drmi_dataset_type']) Nifti1 image" />
32 </outputs> 36 </outputs>
33 <tests> 37 <tests>
34 <test> 38 <test>
35 </test> 39 </test>
36 </tests> 40 </tests>