Mercurial > repos > greg > data_manager_malt_index_builder

comparison data_manager_conf.xml @ 1:787f1ca9045a draft default tip

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author greg
date Wed, 13 Oct 2021 20:12:48 +0000
parents d69ebf52c233
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0:d69ebf52c233 1:787f1ca9045a
1 <data_managers> 1 <data_managers>
2 <data_manager tool_file="data_manager/malt_index_builder.xml" id="malt_index_builder" version="0.5.3"> 2 <data_manager tool_file="data_manager/malt_index_builder.xml" id="data_manager_malt_index_builder">
3 <data_table name="malt_indices"> 3 <data_table name="malt_indices">
4 <output> 4 <output>
5 <column name="value" /> 5 <column name="value"/>
6 <column name="dbkey" /> 6 <column name="dbkey"/>
7 <column name="name" /> 7 <column name="name"/>
8 <column name="path" output_ref="out_file" > 8 <column name="path" output_ref="out_file">
9 <move type="directory" relativize_symlinks="True"> 9 <move type="directory" relativize_symlinks="True">
10 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> 10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">malt_index/${value}</target>
11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/malt_index/${value}</target>
12 </move> 11 </move>
13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/malt_index/${value}/${path}</value_translation> 12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/malt_index/${value}</value_translation>
14 <value_translation type="function">abspath</value_translation> 13 <value_translation type="function">abspath</value_translation>
15 </column> 14 </column>
16 </output> 15 </output>
17 </data_table> 16 </data_table>
18 </data_manager> 17 </data_manager>