Mercurial > repos > greg > data_manager_gtdbtk_database_installer
diff tool-data/gtdbtk_database.loc.sample @ 0:3ab83cb7e2d2 draft
Uploaded
| author | greg |
|---|---|
| date | Tue, 15 Mar 2022 15:32:31 +0000 |
| parents | |
| children | 7093598fa300 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/gtdbtk_database.loc.sample Tue Mar 15 15:32:31 2022 +0000 @@ -0,0 +1,26 @@ +# This is a sample file distributed with Galaxy that enables tools +# to use a directory of GTDB-Tk databases. The gtdbtk_databases.loc +# file has this format (longer white space characters are TAB characters): +# +# <unique_build_id> <display_name> <directory_path> +# +# So, for example, if you have the gtdbtk 202 stored in +# /depot/data2/galaxy/gtdbtk/202/, +# then the gtdbtk_databases.loc entry would look like this: +# +# release202 gtdbtk database release 202 /depot/data2/galaxy/gtdbtk/release202 +# +# and your /depot/data2/galaxy/gtdbtk/release202 directory +# would contain GTDB-Tk database files for release 202, sommething like this: +# +#drwxr-sr-x 3 gvk G-824019 4096 Apr 20 2021 fastani/ +#-rw-r--r-- 1 gvk G-824019 4810764 Apr 22 2021 manifest.tsv +#drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 markers/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 masks/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 metadata/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 21 2021 mrca_red/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 msa/ +#drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 pplacer/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 radii/ +#drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 taxonomy/ +release202 GTDB-Tk database release 202 /depot/data2/galaxy/tool-data/gtdbtk_database/release202