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comparison tool-data/gtdbtk_database.loc.sample @ 0:3ab83cb7e2d2 draft

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author greg
date Tue, 15 Mar 2022 15:32:31 +0000
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-1:000000000000 0:3ab83cb7e2d2
1 # This is a sample file distributed with Galaxy that enables tools
2 # to use a directory of GTDB-Tk databases. The gtdbtk_databases.loc
3 # file has this format (longer white space characters are TAB characters):
4 #
5 # <unique_build_id> <display_name> <directory_path>
6 #
7 # So, for example, if you have the gtdbtk 202 stored in
8 # /depot/data2/galaxy/gtdbtk/202/,
9 # then the gtdbtk_databases.loc entry would look like this:
10 #
11 # release202 gtdbtk database release 202 /depot/data2/galaxy/gtdbtk/release202
12 #
13 # and your /depot/data2/galaxy/gtdbtk/release202 directory
14 # would contain GTDB-Tk database files for release 202, sommething like this:
15 #
16 #drwxr-sr-x 3 gvk G-824019 4096 Apr 20 2021 fastani/
17 #-rw-r--r-- 1 gvk G-824019 4810764 Apr 22 2021 manifest.tsv
18 #drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 markers/
19 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 masks/
20 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 metadata/
21 #drwxr-sr-x 2 gvk G-824019 4096 Apr 21 2021 mrca_red/
22 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 msa/
23 #drwxr-sr-x 4 gvk G-824019 4096 Apr 21 2021 pplacer/
24 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 radii/
25 #drwxr-sr-x 2 gvk G-824019 4096 Apr 20 2021 taxonomy/
26 release202 GTDB-Tk database release 202 /depot/data2/galaxy/tool-data/gtdbtk_database/release202