name: data_manager_dram_database_downloader
owner: iuc
description: DRAM for distilling microbial metabolism to automate the curation of microbiome function
homepage_url: https://github.com/WrightonLabCSU/DRAM
long_description: |
  DRAM (Distilled and Refined Annotation of Metabolism) is a tool for annotating metagenomic assembled genomes
  and VirSorter identified viral contigs. DRAM annotates MAGs and viral contigs using KEGG (if provided by the
  user), UniRef90, PFAM, dbCAN, RefSeq viral, VOGDB and the MEROPS peptidase database as well as custom user
  databases. DRAM is run in two stages. First an annotation step to assign database identifiers to gene and then a
  distill step to curate these annotations into useful functional categories. Additionally viral contigs are further
  analyzed during to identify potential AMGs. This is done via assigning an auxiliary score and flags representing the
  confidence that a gene is both metabolic and viral.
remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dram_database_downloader
type: unrestricted
categories:
- Data Managers