Mercurial > repos > greg > bwa_base
annotate tool_dependencies.xml @ 0:a1c7ad1721e6 draft
Uploaded
| author | greg |
|---|---|
| date | Thu, 17 Jan 2013 16:39:02 -0500 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="bwa" version="0.5.9"> | |
| 4 <install version="1.0"> | |
| 5 <actions> | |
| 6 <action type="download_by_url">http://downloads.sourceforge.net/project/bio-bwa/bwa-0.5.9.tar.bz2</action> | |
| 7 <action type="shell_command">make</action> | |
| 8 <action type="move_file"> | |
| 9 <source>bwa</source> | |
| 10 <destination>$INSTALL_DIR/bin</destination> | |
| 11 </action> | |
| 12 <action type="set_environment"> | |
| 13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 14 </action> | |
| 15 </actions> | |
| 16 </install> | |
| 17 <readme> | |
| 18 Compiling BWA requires zlib and libpthread to be present on your system. | |
| 19 </readme> | |
| 20 </package> | |
| 21 </tool_dependency> |