Mercurial > repos > greg > bwa_059

annotate tool_dependencies.xml @ 0:a347750db1d1 draft default tip

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Uploaded tool_dependencies.xml
author greg
date Wed, 30 Jan 2013 16:35:56 -0500
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a347750db1d1 Uploaded tool_dependencies.xml
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="bwa" version="0.5.9">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://downloads.sourceforge.net/project/bio-bwa/bwa-0.5.9.tar.bz2</action>
a347750db1d1 Uploaded tool_dependencies.xml
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7 <action type="shell_command">make clean</action>
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8 <action type="shell_command">make</action>
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9 <action type="move_file">
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10 <source>bwa</source>
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11 <destination>$INSTALL_DIR/bin</destination>
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12 </action>
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13 <action type="set_environment">
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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15 </action>
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16 </actions>
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17 </install>
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18 <readme>
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19 Compiling BWA requires zlib and libpthread to be present on your system.
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20 </readme>
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21 </package>
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22 </tool_dependency>