--- a/bmsb.xml	Mon Aug 01 11:16:51 2016 -0400
+++ b/bmsb.xml	Mon Aug 01 11:35:03 2016 -0400
@@ -9,33 +9,12 @@
             #import json
             Rscript $__tool_directory__/bmsb.R
             -o "$output"
-            #if str($output_r_logging_cond.output_r_logging) == "yes":
-                -s "true"
-                -m "$output_r_log"
-            #end if
-            #if str($output_r_logging_cond.output_r_logging) == "yes":
-                -e "true"
-                -x "$output_ex_report"
-            #end if
         ]]>
     </command>
     <inputs>
-        <conditional name="output_r_logging_cond">
-            <param name="output_r_logging" type="select" label="Output R logging?" help="Generate an additional dataset consisting of R messages.">
-                <option value="yes" selected="True">Yes</option>
-                <option value="no">No</option>
-            </param>
-            <when value="no"/>
-            <when value="yes"/>
-        </conditional>
+        <param name="input" type="data" format="csv" label="CSV input" />
     </inputs>
     <outputs>
-        <data name="output_r_log" format="txt" label="${tool.name} on ${on_string}: R log">
-            <filter>output_r_logging_cond['output_r_logging'] == "yes"</filter>
-        </data>
-        <data name="output_ex_report" format="json" label="${tool.name} on ${on_string}: Experiment report">
-            <filter>output_experiment_report_cond['output_experiment_report'] == "yes"</filter>
-        </data>
         <data name="output" format="RData"/>
     </outputs>
     <help>