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comparison bmsb.xml @ 1:e6809bb0bcf8 draft

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Uploaded
author greg
date Mon, 01 Aug 2016 11:35:03 -0400
parents ff341ead2c11
children f622abc513d6
comparison
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0:ff341ead2c11 1:e6809bb0bcf8
7 <command> 7 <command>
8 <![CDATA[ 8 <![CDATA[
9 #import json 9 #import json
10 Rscript $__tool_directory__/bmsb.R 10 Rscript $__tool_directory__/bmsb.R
11 -o "$output" 11 -o "$output"
12 #if str($output_r_logging_cond.output_r_logging) == "yes":
13 -s "true"
14 -m "$output_r_log"
15 #end if
16 #if str($output_r_logging_cond.output_r_logging) == "yes":
17 -e "true"
18 -x "$output_ex_report"
19 #end if
20 ]]> 12 ]]>
21 </command> 13 </command>
22 <inputs> 14 <inputs>
23 <conditional name="output_r_logging_cond"> 15 <param name="input" type="data" format="csv" label="CSV input" />
24 <param name="output_r_logging" type="select" label="Output R logging?" help="Generate an additional dataset consisting of R messages.">
25 <option value="yes" selected="True">Yes</option>
26 <option value="no">No</option>
27 </param>
28 <when value="no"/>
29 <when value="yes"/>
30 </conditional>
31 </inputs> 16 </inputs>
32 <outputs> 17 <outputs>
33 <data name="output_r_log" format="txt" label="${tool.name} on ${on_string}: R log">
34 <filter>output_r_logging_cond['output_r_logging'] == "yes"</filter>
35 </data>
36 <data name="output_ex_report" format="json" label="${tool.name} on ${on_string}: Experiment report">
37 <filter>output_experiment_report_cond['output_experiment_report'] == "yes"</filter>
38 </data>
39 <data name="output" format="RData"/> 18 <data name="output" format="RData"/>
40 </outputs> 19 </outputs>
41 <help> 20 <help>
42 **What it does** 21 **What it does**
43 22