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1 <?xml version="."?>
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2 <tool id="bmsb_model" name="Brown Marmorated Stink Bug" version="1.0.0">
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3 <description></description>
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4 <requirements>
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5 <requirement type="package" version="1.3.0">r-optparse</requirement>
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6 </requirements>
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7 <command>
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8 <![CDATA[
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9 Rscript $__tool_directory__/bmsb.R
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10 -a $adult_mort
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11 -b $adult_accum
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12 -c $egg_mort
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13 -d $latitude
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14 -e $location
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15 -f $max_clutch_size
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16 -i $min_clutch_size
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17 -j $nymph_mort
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18 -k $old_nymph_accum
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19 -o $output
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20 -p $oviposition
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21 -q $photoperiod
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22 -s $replications
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23 -t $se_plot
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24 -u $year
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25 -v "$temperature_dataset"
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26 -y $young_nymph_accum
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27 ]]>
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28 </command>
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29 <inputs>
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30 <param name="location" type="select" label="Select a location">
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31 <option value="asheville" selected="True">Asheville</option>
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32 <option value="wenatchee">Wenatchee</option>
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33 </param>
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34 <param name="latitude" type="float" value="35.60" label="Latitude of selected location" />
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35 <param name="temperature_dataset" type="data" format="csv" label="Select dataset containing temperatures" />
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36 <param name="year" type="integer" value="2004" min="1990" label="Enter the year for the temperature data" />
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37 <param name="replications" type="integer" value="3" label="Number of replications" />
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38 <param name="photoperiod" type="float" value="13.5" label="Critical photoperiod for diapause induction/termination" />
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39 <param name="egg_mort" type="integer" value="1" label="Adjustment rate for egg mortality" />
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40 <param name="nymph_mort" type="integer" value="1" label="Adjustment rate for nymph mortality" />
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41 <param name="adult_mort" type="integer" value="1" label="Adjustment rate for adult mortality" />
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42 <param name="oviposition" type="integer" value="1" label="Adjustment oviposition rate" />
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43 <param name="min_clutch_size" type="integer" value="0" label="Adjustment of minimum clutch size" />
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44 <param name="max_clutch_size" type="integer" value="0" label="Adjustment of maximum clutch size" />
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45 <param name="young_nymph_accum" type="integer" value="0" label="Adjustment of DD accumulation (egg->young nymph)" />
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46 <param name="old_nymph_accum" type="integer" value="0" label="Adjustment of DD accumulation (young nymph->old nymph)" />
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47 <param name="adult_accum" type="integer" value="0" label="Adjustment of DD accumulation (old nymph->adult)" />
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48 <param name="se_plot" type="select" label="Plot SE?">
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49 <option value="0" selected="True">No</option>
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50 <option value="1">Yes</option>
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51 </param>
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52 </inputs>
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53 <outputs>
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54 <data name="output" format="pdf" label="${tool.name} ${location}:${year} on ${on_string}" />
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55 </outputs>
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56 <help>
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57 **What it does**
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58
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59 BMSB prototype tool.
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60 </help>
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61 <citations>
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62 <citation></citation>
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63 </citations>
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64 </tool>
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