Mercurial > repos > galaxyp > spectrast2tsv
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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/spectrast2tsv commit d8b91dbe304c99bb5a46da25a5820005cde105c5-dirty
| author | galaxyp |
|---|---|
| date | Sat, 30 May 2015 05:10:54 -0400 |
| parents | |
| children |
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### SequestConsensusFiltered.sptxt (Text version of SequestConsensusFiltered.splib) ### SpectraST (version 4.0, TPP v4.5 RAPTURE rev 1, Build 201111141620 (MinGW)) ### ### COMPILE FROM "z:/html/Sorcerer_Searches/1201_YeastPostDiauxic/SequestConsensusLib.splib" ; FILTER for Protein!~reverse_ ### > SequestConsensusLib.splib : COMPILE FROM "/mnt/u07/lgillet/html/Sorcerer_Searches/1201_YeastPostDiauxic/SequestConsensusLib2.splib" [CONSENSUS;r=1;I=;_QUO=0.6;_XNR=100;_WGT=SN;_DIS=TRUE;_XPK=150;_XPU=300;_BDN=FALSE;_TBD=FALSE] ### > > SequestConsensusLib2.splib : IMPORT FROM PepXML "/mnt/u07/lgillet/html/Sorcerer_Searches/1201_YeastPostDiauxic/interact-SequestAllCombined.pep.xml", (SEQUEST against "/IMSB/users/lgillet/html/databases/SGD_decoy.fasta" (AA); ) [P=0.7;n=;g=FALSE;o=FALSE;I=;_RNT=0;_RDR=100000;_DCN=0;_NAA=6;_NPK=10;_MDF=9999;_CEN=FALSE;_XAN=FALSE;_BRK=FALSE;_BRM=FALSE] ### === Name: FAIPAINVTSSSTAVAALEAAR/2 LibID: 3829 MW: 2161.1731 PrecursorMZ: 1080.5866 Status: Normal FullName: K.FAIPAINVTSSSTAVAALEAAR.D/2 Comment: AvePrecursorMz=1081.2350 BestRawSpectrum=lgillet_L120122_003.21975.21975 BinaryFileOffset=24442137 CollisionEnergy=0.0 ConsFracAssignedPeaks=0.720 DeltaCn=0.6150 DotConsensus=0.93,0.01;0/100 FracUnassigned=0.38,2/5;0.33,5/20;0.35,328/558 Inst=0 MassDiff=-0.0281 MassDiffCounts=1/0:100 MaxRepSN=31.9 Mods=0 NAA=22 NMC=0 NTT=2 Nreps=100/200 OrigMaxIntensity=9.7e+03 Parent=1080.59 Pep=Tryptic PrecursorIntensity=0 Prob=1.0000 ProbRange=1,1,1,1 Protein=1/YKL060C RepFracAssignedPeaks=0.433 RepNumPeaks=455.3/66.5 RetentionTime=6210.1,8377.0,5782.0 SN=200.0 Sample=1/_mnt_u07_lgillet_html_Sorcerer_Searches_1201_YeastPostDiauxic_interact-SequestAllCombined,100,200 Se=1^S100:dc=0.6250/0.0232,fv=7.2567/0.2167,pb=1.0000/0.0000,xc=4.6179/0.1759 Spec=Consensus TotalIonCurrent=1.8e+05 XCorr=5.1460 NumPeaks: 150 70.0666 1347.0 IPA/0.00,IPA/0.00,y1-35^2/-0.48 100/60 0.0013|0.29 86.0974 2116.6 IIA/0.00,IIA/0.00,IIA/0.00,IIA/0.00,ILA/0.00,ILA/0.00,INA/-0.96,INA/-0.96 100/60 0.0014|0.26 120.0812 737.8 a1/0.00,IFA/0.00,IFA/0.00 100/60 0.0019|0.33 141.1028 1862.0 y3-35^2/-0.48 100/60 0.0015|0.24 157.1336 386.9 y1-18/0.03 100/60 0.0060|0.38 158.0930 357.7 y1-17/0.00,b3-17^2/0.00 100/60 0.0027|0.40 169.0976 8114.0 ? 100/60 0.0013|0.24 175.1190 1740.9 y1/0.00 100/60 0.0017|0.29 185.1272 413.9 ? 100/60 0.0091|0.33 186.1238 1035.1 ? 100/60 0.0024|0.31 191.1182 1561.6 a2/0.00 100/60 0.0021|0.26 211.1433 414.0 y2-35/0.02 100/60 0.0073|0.34 212.1036 340.2 y2-35i/-0.02 99/60 0.0039|0.37 214.1188 856.4 y4-18^2/-0.50,y4-17^2/-0.99 100/60 0.0031|0.29 219.1128 3759.1 b2/-0.00 100/60 0.0018|0.27 228.1344 1305.7 y2-18/-0.01 100/60 0.0029|0.29 238.1186 368.5 ? 98/60 0.0045|0.39 245.1286 497.6 ? 100/60 0.0041|0.38 246.1566 447.3 y2/0.00 100/60 0.0044|0.34 254.1865 1300.0 ? 100/60 0.0030|0.27 282.1809 5129.8 y3-35/0.02 100/60 0.0021|0.26 283.1403 495.2 y3-35i/-0.02 100/60 0.0043|0.34 287.1749 639.3 ? 98/60 0.0039|0.32 297.1564 353.5 y6-36^2/-0.52 84/60 0.0056|0.37 299.1732 585.8 y3-18/-0.01,b6-17^2/0.50 99/60 0.0073|0.36 299.1927 316.3 ? 77/60 0.0170|0.41 314.1772 345.0 ? 85/60 0.0075|0.39 315.1662 353.7 b3-17/-0.00 84/60 0.0054|0.37 316.1644 944.5 y6^2/0.48 100/60 0.0040|0.31 317.1925 2146.7 y3/-0.00 100/60 0.0037|0.29 327.2019 485.9 y7-46^2/-1.00 97/60 0.0051|0.37 332.1963 828.6 b3/-0.00,y7-36^2/-0.99 100/60 0.0044|0.31 351.2019 609.3 y7^2/0.00,a7^2/0.99 100/60 0.0053|0.35 351.2025 308.8 ? 61/60 0.0146|0.39 353.2174 482.9 ? 94/60 0.0054|0.36 359.2052 338.8 ? 90/60 0.0069|0.37 365.1826 391.7 b7^2/0.97 91/60 0.0071|0.43 368.2269 589.2 ? 99/60 0.0057|0.33 379.1965 752.3 y8-44^2/0.46 100/60 0.0068|0.30 379.2018 384.9 ? 74/60 0.0159|0.43 382.2086 454.2 y8-36^2/-0.52 93/60 0.0075|0.34 385.2066 326.3 ? 80/60 0.0077|0.44 387.2003 1500.0 ? 100/60 0.0051|0.29 387.2042 632.6 ? 77/60 0.0172|0.49 396.2220 5492.6 b8-34^2/-0.50 100/60 0.0030|0.29 396.2351 1376.3 [b8-34^2/-0.4830] 64/60 0.0219|0.74 401.2511 360.8 y8^2/0.52,a4/-0.00,y4-44/-0.99 89/60 0.0107|0.38 429.2366 368.2 y4-18i/0.01 85/60 0.0190|0.36 429.2466 669.5 b4/-0.00,y4-17/0.04 99/60 0.0073|0.37 432.2236 325.1 ? 84/60 0.0065|0.43 446.2322 1084.8 y4/-0.00,b9-35^2/-0.52 100/60 0.0068|0.33 446.2370 527.1 ? 91/60 0.0183|0.41 450.2678 488.4 a9^2/-0.00 100/60 0.0090|0.38 467.2946 1322.7 ? 100/60 0.0069|0.31 467.2967 641.3 ? 95/60 0.0196|0.41 472.2875 746.7 a5/-0.00 100/60 0.0066|0.36 472.2908 366.2 ? 85/60 0.0190|0.40 478.2631 629.5 y10-17^2/-0.00,y10-18^2/0.49 100/60 0.0089|0.35 478.2670 359.1 ? 82/60 0.0176|0.40 495.2901 3061.2 ? 100/60 0.0064|0.31 495.2909 1196.3 ? 90/60 0.0237|0.55 495.2951 633.9 ? 64/60 0.0317|0.63 500.2830 2313.6 b5/-0.00 100/60 0.0064|0.30 500.2847 1023.7 [b5/-0.0020] 97/60 0.0216|0.49 500.2898 507.0 ? 71/60 0.0338|0.55 559.3143 885.9 y5/-0.01 100/60 0.0097|0.39 559.3181 485.7 ? 97/60 0.0214|0.36 578.3248 452.2 b12-34^2/0.53 99/60 0.0096|0.43 579.3080 314.1 ? 93/60 0.0131|0.48 596.3325 621.3 b6-17/-0.01 100/60 0.0110|0.37 596.3406 374.0 ? 92/60 0.0206|0.42 597.2992 339.4 b6-17i/-0.05 88/60 0.0118|0.43 613.3619 672.5 b6/-0.01,y6-17/0.03 100/60 0.0115|0.35 613.3633 409.4 ? 91/60 0.0223|0.38 630.3522 1209.8 y6/-0.00,a13^2/-0.99 100/60 0.0105|0.30 630.3527 667.2 ? 100/60 0.0226|0.38 630.3535 398.6 ? 87/60 0.0371|0.46 683.3679 316.1 y7-18/-0.02,y7-17/-1.00,b7-45/0.98 97/60 0.0125|0.44 701.3857 2333.6 y7/-0.01 100/60 0.0093|0.32 701.3952 1097.1 [y7/0.0011] 100/60 0.0259|0.45 701.3959 387.1 ? 65/60 0.0517|0.49 701.3970 658.0 ? 93/60 0.0401|0.58 713.3887 356.3 b15-34^2/0.02,b15-35^2/0.51 100/60 0.0140|0.38 800.4541 738.6 ? 100/60 0.0260|0.31 800.4553 1209.7 y8/-0.01,b17^2/-0.98 100/60 0.0126|0.38 800.4649 472.7 ? 96/60 0.0394|0.39 826.4792 323.3 b8/-0.00,y9-46/0.99 100/60 0.0163|0.34 871.4911 1283.8 y9/-0.01 100/60 0.0117|0.38 871.4918 717.2 ? 100/60 0.0300|0.31 871.4992 500.5 ? 97/60 0.0416|0.39 871.5051 317.0 ? 78/60 0.0536|0.38 914.9837 2305.2 y19^2/-0.01 100/60 0.0129|0.36 914.9837 1173.8 [y19^2/-0.0081] 99/60 0.0296|0.40 914.9888 633.6 ? 93/60 0.0453|0.57 971.5266 327.4 y20^2/-0.01,b21-44^2/-0.01,b21-45^2/0.51,b21-46^2/1.00 99/60 0.0197|0.53 972.5362 1301.0 y10/-0.01 100/60 0.0171|0.31 972.5401 811.6 ? 100/60 0.0278|0.38 972.5490 488.4 ? 98/60 0.0445|0.42 972.5517 335.8 ? 85/60 0.0596|0.42 1059.5675 1859.7 y11/-0.01,p-44^2/0.98 100/60 0.0157|0.37 1059.5729 462.8 ? 94/60 0.0651|0.44 1059.5773 1162.7 [y11/-0.0020] 100/60 0.0297|0.34 1059.5827 712.3 ? 100/60 0.0484|0.49 1059.6196 328.7 ? 71/60 0.0635|0.43 1146.6016 2441.6 y12/-0.01 100/60 0.0147|0.34 1146.6040 1404.8 [y12/-0.0073] 100/60 0.0351|0.35 1146.6122 561.4 ? 96/60 0.0696|0.52 1146.6140 857.0 ? 100/60 0.0525|0.47 1146.6408 374.4 ? 78/60 0.0787|0.49 1233.6333 4287.7 y13/-0.01 100/60 0.0147|0.34 1233.6336 482.9 ? 86/60 0.0974|0.56 1233.6440 2217.8 [y13/0.0007] 100/60 0.0372|0.45 1233.6554 1299.6 [y13/0.0120] 100/60 0.0589|0.52 1233.6706 725.1 ? 98/60 0.0761|0.56 1290.6551 376.9 b13/0.98,y14-44/-0.05 100/60 0.0263|0.37 1316.6707 414.8 y14-18/-0.01,y14-17/-0.99,b14-45/0.98 100/60 0.0274|0.34 1334.6793 10000.0 y14/-0.01 100/60 0.0148|0.10 1334.7118 681.0 ? 87/60 0.1195|0.83 1334.7152 4324.5 [y14/0.0242] 100/60 0.0405|0.65 1334.7219 1160.4 [y14/0.0309] 96/60 0.0999|0.90 1334.7245 2026.3 [y14/0.0335] 99/60 0.0730|0.81 1334.6894 8199.7 y15 62/60 0.0589|0.79 1335.6790 603.4 y14i/-0.01 100/60 0.0214|0.33 1335.6818 433.3 ? 99/60 0.0390|0.34 1433.7455 2049.3 y15/-0.01 100/60 0.0198|0.34 1433.7536 871.8 ? 100/60 0.0599|0.42 1433.7620 1355.9 [y15/0.0026] 100/60 0.0324|0.33 1433.7635 395.5 ? 92/60 0.0977|0.45 1433.7645 573.6 ? 99/60 0.0755|0.43 1529.7799 445.5 y16-18/-0.01 98/60 0.0360|0.46 1530.7651 309.5 b16/-0.05,y16-17/-0.01 97/60 0.0347|0.39 1547.7921 5462.2 y16/-0.01 100/60 0.0170|0.37 1547.8069 2683.6 [y16/0.0045] 100/60 0.0422|0.39 1547.8226 592.4 ? 97/60 0.1173|0.67 1547.8261 1599.7 [y16/0.0238] 100/60 0.0616|0.50 1547.8293 912.5 ? 100/60 0.0890|0.63 1547.8712 413.8 ? 87/60 0.1209|0.71 1548.7932 411.4 y16i/-0.01 100/60 0.0275|0.35 1660.8728 434.2 ? 100/60 0.0630|0.34 1660.8740 598.4 ? 100/60 0.0425|0.30 1660.8772 892.9 y17/-0.01 100/60 0.0299|0.37 1660.8870 332.6 ? 91/60 0.0779|0.37 1731.9090 419.3 y18/-0.01 100/60 0.0313|0.31 1731.9153 311.0 ? 100/60 0.0488|0.32 1828.8525 336.2 ? 86/60 0.0332|0.50 1828.9618 1744.1 y19/-0.01 100/60 0.0272|0.36 1828.9639 1172.5 [y19/-0.0123] 100/60 0.0436|0.35 1828.9747 859.4 ? 100/60 0.0630|0.40 1828.9854 541.7 ? 100/60 0.0923|0.48 1829.0936 333.9 ? 81/60 0.0271|0.47 Name: AAELDVLNDPK/2 LibID: 43 MW: 1185.6230 PrecursorMZ: 592.8115 Status: Normal FullName: K.AAELDVLNDPK.I/2 Comment: AvePrecursorMz=593.1632 BinaryFileOffset=265269 CollisionEnergy=0.0 DeltaCn=0.4290 FracUnassigned=0.21,1/5;0.45,11/20;0.37,76/150 MassDiff=-0.0185 Mods=0 NAA=11 NMC=0 NTT=2 Nreps=1/1 OrigMaxIntensity=3.8e+03 Parent=592.811 Pep=Tryptic PrecursorIntensity=0 Prob=1.0000 Protein=1/YPR041W RawSpectrum=lgillet_L120124_003.14730.14730 RetentionTime=4064.0,4064.0,4064.0 Sample=1/_mnt_u07_lgillet_html_Sorcerer_Searches_1201_YeastPostDiauxic_interact-SequestAllCombined,1,1 Se=1^S1:pb=1.0000/0,fv=5.1761/0,xc=3.2380/0,dc=0.4290/0 Spec=Single TotalIonCurrent=7.1e+04 XCorr=3.2380 NumPeaks: 150 70.0641 638.2 IPA/-0.00,IPA/-0.00 72.0801 891.7 b1/0.04,b2^2/0.04,IVA/-0.00,IVA/-0.00 84.0454 429.0 ? 84.0798 408.1 ? 86.0978 1028.0 ILA/0.00,ILA/0.00,ILA/0.00,ILA/0.00 102.0511 1028.0 IEA/-0.00,IEA/-0.00 115.0798 567.6 ? 115.0858 1917.0 a2/-0.00,b3-44^2/0.52 120.0802 481.3 ? 129.1009 905.0 y1-18/-0.00 130.0850 287.7 y1-17/-0.00 136.0736 5076.9 b3^2/-0.49 143.0799 5273.3 b2/-0.00 147.1098 766.4 y1/-0.00 147.1159 300.8 ? 147.1210 337.4 ? 173.0927 397.3 ? 175.1058 361.0 b4-35^2/-0.48 185.0906 287.7 b4-17^2/0.50 185.1685 308.7 ? 187.1067 1666.2 ? 197.1268 729.8 ? 201.0825 951.8 y2-44/0.91 201.0920 549.3 ? 201.1194 303.8 ? 203.1012 306.7 y2-44i/0.93 207.1127 4645.6 ? 207.1334 285.4 ? 209.1337 287.7 y2-35/0.01 215.1011 695.8 y4-46^2/0.98 215.1386 1171.9 y4-44^2/0.01,y4-45^2/0.53 225.1228 831.8 ? 226.1169 379.2 ? 226.1532 1449.1 y2-18/-0.00,b3-46/0.03 226.1667 541.5 ? 229.1131 392.4 y2-17i/-0.03,y4-17^2/0.51,b5-44^2/0.49 235.1067 2668.1 ? 243.1081 303.4 ? 243.1326 638.2 ? 244.1660 10000.0 y2/0.00,a3/0.04 246.1826 389.7 y2i/0.02 272.1222 7172.4 b3/-0.00,y5-44^2/0.45,y5-45^2/0.97 286.1353 358.4 y5-17^2/0.99,a6^2/-0.02 309.1011 308.7 ? 326.1323 303.4 y6-35^2/0.45,y6-36^2/0.95 328.1793 499.6 ? 328.1941 515.3 ? 340.1472 870.5 b4-46i/-0.06 340.1662 353.1 ? 342.1845 290.3 y3-17/0.02,b4-44/0.97 343.1639 638.2 y6^2/-0.03,a7^2/0.46 344.1558 293.0 y3-17i/-0.01 347.2317 387.1 b7-18^2/-0.46,b7-17^2/-0.95 350.1367 3434.5 b4-35/-0.03 357.2157 504.5 b7^2/0.52,a4/0.00 358.1589 392.4 a4i/-0.05 358.1775 287.7 ? 359.1833 588.5 y3/-0.01 359.2043 536.3 a4i/-0.01 369.1523 343.0 b4-17/0.97 385.1973 677.5 ? 385.2171 852.7 b4/0.01 393.2210 284.5 ? 397.2202 306.0 ? 411.2214 1080.3 ? 421.1901 481.3 ? 421.2112 1062.0 ? 429.1844 329.3 y4-44/-0.06,y4-45/0.97 439.1921 285.1 y4-35/0.99 439.2207 928.6 y8-36^2/-0.02,y8-35^2/-0.51 442.2353 612.1 ? 449.1896 303.4 ? 449.2064 593.5 y8-17^2/0.47,y8-18^2/0.96,b9-44^2/-0.03,b9-45^2/0.48,b9-46^2/0.98 452.1973 387.0 ? 456.1894 614.2 y4-17/-0.02,b5-44/-0.06 456.2136 582.8 y4-18i/-0.01 457.2404 494.2 y8^2/-0.01,a9^2/0.01 473.2253 1982.7 y4/-0.01 473.2412 1365.4 a5i/0.00 473.2734 594.1 ? 486.2174 290.3 ? 491.2238 345.6 ? 500.2331 803.0 b5/-0.00,y9-44^2/0.45,y9-45^2/0.97 500.2489 483.9 ? 521.7752 303.4 y9^2/0.00 528.2515 307.7 b10+18^2/-0.51 552.2946 347.6 ? 554.2903 429.0 b6-46/0.99 557.2613 598.7 y10^2/-0.03 557.2947 303.4 ? 569.2977 392.4 p-46^2/-0.51,y5-17/0.00,y5-18/0.99 572.2834 488.8 a6i/-0.03 581.2803 306.0 ? 581.3084 313.3 b6-18/0.02,b6-17/-0.97 586.2896 1697.6 [y5/-0.0299] 586.3250 5992.7 y5/0.01 586.3703 337.4 ? 589.2850 627.8 ? 589.3185 2158.0 ? 589.3454 1488.4 ? 589.3769 355.7 ? 592.3492 413.9 ? 592.7869 1184.9 [p^2/-0.0246] 592.8243 1925.2 p^2/0.01 599.2787 282.5 ? 599.3063 530.9 ? 599.3251 653.8 b6/0.02 670.3287 437.4 ? 670.3558 355.7 ? 685.3626 1831.0 a7/0.97 685.3942 1967.0 y6/0.01 685.4188 465.6 ? 685.4262 410.7 ? 685.4452 285.1 ? 701.3481 284.8 ? 736.3894 7658.9 ? 736.4460 939.1 ? 737.3785 318.2 ? 737.4271 379.3 ? 781.3696 337.6 b8-45/-0.04,b8-46/0.94 799.3571 303.4 a8/0.92 800.3607 1140.5 [y7/-0.0541] 800.3955 5532.3 y7/-0.02 800.4310 5092.9 a8i/1.00 800.4727 1035.8 [y7/0.0579] 801.4191 306.0 y7i/0.00 835.4294 308.5 ? 835.4499 368.8 ? 835.4684 711.5 ? 835.4857 855.3 ? 913.4274 353.1 ? 913.4537 918.1 ? 913.4868 3314.2 y8/-0.01,a9/0.02 913.5197 2393.4 [y8/0.0208] 941.4506 324.4 b9/-0.01 950.4389 797.8 ? 950.4761 1566.8 ? 950.5020 1627.0 ? 950.5334 1062.0 ? 1021.5166 426.4 b10-17/0.03 1021.5525 423.8 ? 1024.5153 397.6 y9-18/-0.02 1042.5045 850.1 ? 1042.5350 1265.4 y9/-0.01 1042.5577 1046.3 [y9/0.0162] 1042.6211 449.9 ? 1147.5754 350.2 ? 1147.5819 370.9 ? 1166.6080 415.9 ? 1184.6034 2288.8 ?