Mercurial > repos > galaxyp > psm_to_sam

diff PSM2SAM.xml @ 1:34f9e847dd4e draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/psm_to_sam commit cf9086847f3153e28b697b5f4b0da1a677eb165a-dirty
author galaxyp
date Thu, 12 Nov 2015 18:11:28 -0500
parents c506e5dac2bb
children e1bb35f6ca28
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--- a/PSM2SAM.xml	Fri Oct 02 14:14:15 2015 -0400
+++ b/PSM2SAM.xml	Thu Nov 12 18:11:28 2015 -0500
@@ -1,5 +1,8 @@
 <tool id="PSMtoSAM" name="PSM to SAM" version="1.3.2">
   <description>Generate SAM files from PSMs.</description>
+  <stdio>
+    <exit_code range="1:" level="fatal" description="Job Failed" />
+  </stdio>
   <command interpreter="Rscript --vanilla">PSM2SAM.R
        #if str($input).strip() != "":
           --passedPSM="$input"