Mercurial > repos > galaxyp > psm_to_sam

comparison PSM2SAM.xml @ 1:34f9e847dd4e draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/psm_to_sam commit cf9086847f3153e28b697b5f4b0da1a677eb165a-dirty
author galaxyp
date Thu, 12 Nov 2015 18:11:28 -0500
parents c506e5dac2bb
children e1bb35f6ca28
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0:c506e5dac2bb 1:34f9e847dd4e
1 <tool id="PSMtoSAM" name="PSM to SAM" version="1.3.2"> 1 <tool id="PSMtoSAM" name="PSM to SAM" version="1.3.2">
2 <description>Generate SAM files from PSMs.</description> 2 <description>Generate SAM files from PSMs.</description>
3 <stdio>
4 <exit_code range="1:" level="fatal" description="Job Failed" />
5 </stdio>
3 <command interpreter="Rscript --vanilla">PSM2SAM.R 6 <command interpreter="Rscript --vanilla">PSM2SAM.R
4 #if str($input).strip() != "": 7 #if str($input).strip() != "":
5 --passedPSM="$input" 8 --passedPSM="$input"
6 #end if 9 #end if
7 #if str($scoreColumn).strip() != "": 10 #if str($scoreColumn).strip() != "":