|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="libtool" version="2.4">
|
|
|
4 <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
|
|
|
5 </package>
|
|
|
6 <package name="Qt" version="4.8">
|
|
|
7 <repository changeset_revision="64344b23c64c" name="package_qt_4_8" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
|
|
|
8 </package>
|
|
2
|
9 <package name="zlib" version="1.2.8">
|
|
|
10 <repository changeset_revision="12711c8cada7" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
|
|
|
11 </package>
|
|
1
|
12 <package name="openms" version="1.11.1">
|
|
0
|
13 <install version="1.0">
|
|
|
14 <actions>
|
|
2
|
15 <action type="download_by_url">http://sourceforge.net/projects/open-ms/files/OpenMS/OpenMS-1.11.1/OpenMS-1.11.1.tar.gz</action>
|
|
0
|
16 <!-- populate the environment variables from the dependend repos -->
|
|
|
17 <action type="set_environment_for_install">
|
|
|
18 <repository changeset_revision="5ccfb33b5622" name="package_libtool_2_4" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
|
|
|
19 <package name="libtool" version="2.4" />
|
|
|
20 </repository>
|
|
|
21 <repository changeset_revision="64344b23c64c" name="package_qt_4_8" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
|
|
2
|
22 <package name="Qt" version="4.8" />
|
|
|
23 </repository>
|
|
|
24 <repository changeset_revision="12711c8cada7" name="package_zlib_1_2_8" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
|
|
|
25 <package name="zlib" version="1.2.8" />
|
|
0
|
26 </repository>
|
|
|
27 </action>
|
|
|
28
|
|
|
29 <action type="change_directory">contrib</action>
|
|
2
|
30 <action type="shell_command">cmake . -DBUILD_TYPE=SEQAN</action>
|
|
|
31 <action type="shell_command">cmake . -DBUILD_TYPE=LIBSVM</action>
|
|
|
32 <action type="shell_command">cmake . -DBUILD_TYPE=XERCESC</action>
|
|
|
33 <action type="shell_command">cmake . -DBUILD_TYPE=GSL</action>
|
|
|
34 <action type="shell_command">cmake . -DBUILD_TYPE=BOOST</action>
|
|
|
35 <action type="shell_command">cmake . -DBUILD_TYPE=COINOR</action>
|
|
|
36 <action type="shell_command">cmake . -DBUILD_TYPE=BZIP2</action>
|
|
|
37 <action type="shell_command">cmake . -DBUILD_TYPE=GLPK</action>
|
|
|
38
|
|
0
|
39 <action type="change_directory">..</action>
|
|
|
40 <action type="shell_command">cmake . -DINSTALL_PREFIX=$INSTALL_DIR</action>
|
|
|
41 <action type="shell_command">make doc_minimal</action>
|
|
|
42 <action type="shell_command">make install</action>
|
|
|
43 <action type="set_environment">
|
|
|
44 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
|
|
|
45 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
|
|
|
46 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[QT_ROOT_DIR]/lib/</environment_variable>
|
|
|
47 </action>
|
|
|
48 </actions>
|
|
|
49 </install>
|
|
|
50 <readme>
|
|
|
51 This package downloads and installs OpenMS.
|
|
|
52 http://open-ms.sourceforge.net/
|
|
2
|
53
|
|
|
54 Requirements: OpenGL is needed to compile OpenMS. You can find libopengl.so usually in some mesa libraries.
|
|
0
|
55 </readme>
|
|
|
56 </package>
|
|
|
57 </tool_dependency>
|
