Mercurial > repos > galaxyp > openms_peptideindexer
diff PeptideIndexer.xml @ 1:9b1d75e9e8ca draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb
| author | galaxyp |
|---|---|
| date | Tue, 18 Apr 2017 15:48:18 -0400 |
| parents | 6be423eab02b |
| children | 7d90c7d7e67b |
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--- a/PeptideIndexer.xml Wed Mar 01 10:14:35 2017 -0500 +++ b/PeptideIndexer.xml Tue Apr 18 15:48:18 2017 -0400 @@ -25,10 +25,20 @@ -decoy_string "$param_decoy_string" #end if #if $param_decoy_string_position: - -decoy_string_position $param_decoy_string_position + -decoy_string_position + #if " " in str($param_decoy_string_position): + "$param_decoy_string_position" + #else + $param_decoy_string_position + #end if #end if #if $param_missing_decoy_action: - -missing_decoy_action $param_missing_decoy_action + -missing_decoy_action + #if " " in str($param_missing_decoy_action): + "$param_missing_decoy_action" + #else + $param_missing_decoy_action + #end if #end if #if $param_write_protein_sequence: -write_protein_sequence @@ -58,10 +68,20 @@ -filter_aaa_proteins #end if #if $param_enzyme_name: - -enzyme:name $param_enzyme_name + -enzyme:name + #if " " in str($param_enzyme_name): + "$param_enzyme_name" + #else + $param_enzyme_name + #end if #end if #if $param_enzyme_specificity: - -enzyme:specificity $param_enzyme_specificity + -enzyme:specificity + #if " " in str($param_enzyme_specificity): + "$param_enzyme_specificity" + #else + $param_enzyme_specificity + #end if #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: