Mercurial > repos > galaxyp > openms_peptideindexer

comparison PeptideIndexer.xml @ 1:9b1d75e9e8ca draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb
author galaxyp
date Tue, 18 Apr 2017 15:48:18 -0400
parents 6be423eab02b
children 7d90c7d7e67b
comparison
equal deleted inserted replaced
0:6be423eab02b 1:9b1d75e9e8ca
23 #end if 23 #end if
24 #if $param_decoy_string: 24 #if $param_decoy_string:
25 -decoy_string "$param_decoy_string" 25 -decoy_string "$param_decoy_string"
26 #end if 26 #end if
27 #if $param_decoy_string_position: 27 #if $param_decoy_string_position:
28 -decoy_string_position $param_decoy_string_position 28 -decoy_string_position
29 #if " " in str($param_decoy_string_position):
30 "$param_decoy_string_position"
31 #else
32 $param_decoy_string_position
33 #end if
29 #end if 34 #end if
30 #if $param_missing_decoy_action: 35 #if $param_missing_decoy_action:
31 -missing_decoy_action $param_missing_decoy_action 36 -missing_decoy_action
37 #if " " in str($param_missing_decoy_action):
38 "$param_missing_decoy_action"
39 #else
40 $param_missing_decoy_action
41 #end if
32 #end if 42 #end if
33 #if $param_write_protein_sequence: 43 #if $param_write_protein_sequence:
34 -write_protein_sequence 44 -write_protein_sequence
35 #end if 45 #end if
36 #if $param_write_protein_description: 46 #if $param_write_protein_description:
56 #end if 66 #end if
57 #if $param_filter_aaa_proteins: 67 #if $param_filter_aaa_proteins:
58 -filter_aaa_proteins 68 -filter_aaa_proteins
59 #end if 69 #end if
60 #if $param_enzyme_name: 70 #if $param_enzyme_name:
61 -enzyme:name $param_enzyme_name 71 -enzyme:name
72 #if " " in str($param_enzyme_name):
73 "$param_enzyme_name"
74 #else
75 $param_enzyme_name
76 #end if
62 #end if 77 #end if
63 #if $param_enzyme_specificity: 78 #if $param_enzyme_specificity:
64 -enzyme:specificity $param_enzyme_specificity 79 -enzyme:specificity
80 #if " " in str($param_enzyme_specificity):
81 "$param_enzyme_specificity"
82 #else
83 $param_enzyme_specificity
84 #end if
65 #end if 85 #end if
66 #if $adv_opts.adv_opts_selector=='advanced': 86 #if $adv_opts.adv_opts_selector=='advanced':
67 #if $adv_opts.param_force: 87 #if $adv_opts.param_force:
68 -force 88 -force
69 #end if 89 #end if