Mercurial > repos > galaxyp > openms_openswathchromatogramextractor
diff OpenSwathChromatogramExtractor.xml @ 12:d5f9567d0e1c draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
| author | galaxyp |
|---|---|
| date | Wed, 15 May 2019 05:16:34 -0400 |
| parents | ad63e20e7824 |
| children | 77bc8ac934ac |
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--- a/OpenSwathChromatogramExtractor.xml Mon Feb 12 08:38:36 2018 -0500 +++ b/OpenSwathChromatogramExtractor.xml Wed May 15 05:16:34 2019 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> -<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> +<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Targeted Experiments]--> -<tool id="OpenSwathChromatogramExtractor" name="OpenSwathChromatogramExtractor" version="2.2.0"> +<tool id="OpenSwathChromatogramExtractor" name="OpenSwathChromatogramExtractor" version="2.3.0"> <description>Extract chromatograms (XIC) from a MS2 map file.</description> <macros> <token name="@EXECUTABLE@">OpenSwathChromatogramExtractor</token> @@ -10,7 +10,7 @@ <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> - <command>OpenSwathChromatogramExtractor + <command detect_errors="aggressive"><![CDATA[OpenSwathChromatogramExtractor -in #for token in $param_in: @@ -67,7 +67,7 @@ -force #end if #end if -</command> +]]></command> <inputs> <param name="param_in" type="data" format="mzml" multiple="true" optional="False" size="30" label="Input files separated by blank" help="(-in) "> <sanitizer> @@ -106,5 +106,5 @@ <help>Extract chromatograms (XIC) from a MS2 map file. -For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_OpenSwathChromatogramExtractor.html</help> +For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_OpenSwathChromatogramExtractor.html</help> </tool>