Mercurial > repos > galaxyp > openms_openswathchromatogramextractor

comparison OpenSwathChromatogramExtractor.xml @ 12:d5f9567d0e1c draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 05:16:34 -0400
parents ad63e20e7824
children 77bc8ac934ac
comparison
equal deleted inserted replaced
11:f88a8c2335a6 12:d5f9567d0e1c
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Targeted Experiments]--> 3 <!--Proposed Tool Section: [Targeted Experiments]-->
4 <tool id="OpenSwathChromatogramExtractor" name="OpenSwathChromatogramExtractor" version="2.2.0"> 4 <tool id="OpenSwathChromatogramExtractor" name="OpenSwathChromatogramExtractor" version="2.3.0">
5 <description>Extract chromatograms (XIC) from a MS2 map file.</description> 5 <description>Extract chromatograms (XIC) from a MS2 map file.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">OpenSwathChromatogramExtractor</token> 7 <token name="@EXECUTABLE@">OpenSwathChromatogramExtractor</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>OpenSwathChromatogramExtractor 13 <command detect_errors="aggressive"><![CDATA[OpenSwathChromatogramExtractor
14 14
15 -in 15 -in
16 #for token in $param_in: 16 #for token in $param_in:
17 $token 17 $token
18 #end for 18 #end for
65 #if $adv_opts.adv_opts_selector=='advanced': 65 #if $adv_opts.adv_opts_selector=='advanced':
66 #if $adv_opts.param_force: 66 #if $adv_opts.param_force:
67 -force 67 -force
68 #end if 68 #end if
69 #end if 69 #end if
70 </command> 70 ]]></command>
71 <inputs> 71 <inputs>
72 <param name="param_in" type="data" format="mzml" multiple="true" optional="False" size="30" label="Input files separated by blank" help="(-in) "> 72 <param name="param_in" type="data" format="mzml" multiple="true" optional="False" size="30" label="Input files separated by blank" help="(-in) ">
73 <sanitizer> 73 <sanitizer>
74 <valid initial="string.printable"> 74 <valid initial="string.printable">
75 <remove value="'"/> 75 <remove value="'"/>
104 <data name="param_out" format="mzml"/> 104 <data name="param_out" format="mzml"/>
105 </outputs> 105 </outputs>
106 <help>Extract chromatograms (XIC) from a MS2 map file. 106 <help>Extract chromatograms (XIC) from a MS2 map file.
107 107
108 108
109 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_OpenSwathChromatogramExtractor.html</help> 109 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_OpenSwathChromatogramExtractor.html</help>
110 </tool> 110 </tool>