Mercurial > repos > galaxyp > openms_noisefiltersgolay

comparison NoiseFilterSGolay.xml @ 12:cd0e5d7a8231 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 05:56:37 -0400
parents 3c6cd53e0438
children 7cd79c369f8d
comparison
equal deleted inserted replaced
11:22ff13e1592b 12:cd0e5d7a8231
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Signal processing and preprocessing]--> 3 <!--Proposed Tool Section: [Signal processing and preprocessing]-->
4 <tool id="NoiseFilterSGolay" name="NoiseFilterSGolay" version="2.2.0"> 4 <tool id="NoiseFilterSGolay" name="NoiseFilterSGolay" version="2.3.0">
5 <description>Removes noise from profile spectra by using a Savitzky Golay filter. Requires uniform (equidistant) data.</description> 5 <description>Removes noise from profile spectra by using a Savitzky Golay filter. Requires uniform (equidistant) data.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">NoiseFilterSGolay</token> 7 <token name="@EXECUTABLE@">NoiseFilterSGolay</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>NoiseFilterSGolay 13 <command detect_errors="aggressive"><![CDATA[NoiseFilterSGolay
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
35 #end if 35 #end if
36 #if $adv_opts.param_force: 36 #if $adv_opts.param_force:
37 -force 37 -force
38 #end if 38 #end if
39 #end if 39 #end if
40 </command> 40 ]]></command>
41 <inputs> 41 <inputs>
42 <param name="param_in" type="data" format="mzml" optional="False" label="input raw data file" help="(-in) "/> 42 <param name="param_in" type="data" format="mzml" optional="False" label="input raw data file" help="(-in) "/>
43 <param name="param_algorithm_frame_length" type="integer" value="11" label="The number of subsequent data points used for smoothing" help="(-frame_length) &lt;br&gt;This number has to be uneven. If it is not, 1 will be added"/> 43 <param name="param_algorithm_frame_length" type="integer" value="11" label="The number of subsequent data points used for smoothing" help="(-frame_length) &lt;br&gt;This number has to be uneven. If it is not, 1 will be added"/>
44 <param name="param_algorithm_polynomial_order" type="integer" value="4" label="Order or the polynomial that is fitted" help="(-polynomial_order) "/> 44 <param name="param_algorithm_polynomial_order" type="integer" value="4" label="Order or the polynomial that is fitted" help="(-polynomial_order) "/>
45 <expand macro="advanced_options"> 45 <expand macro="advanced_options">
54 <data name="param_out" format="mzml"/> 54 <data name="param_out" format="mzml"/>
55 </outputs> 55 </outputs>
56 <help>Removes noise from profile spectra by using a Savitzky Golay filter. Requires uniform (equidistant) data. 56 <help>Removes noise from profile spectra by using a Savitzky Golay filter. Requires uniform (equidistant) data.
57 57
58 58
59 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_NoiseFilterSGolay.html</help> 59 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_NoiseFilterSGolay.html</help>
60 </tool> 60 </tool>