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comparison MultiplexResolver.xml @ 12:302363c6254a draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 06:02:16 -0400
parents 2ba399876379
children 9d5c51404764
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11:43150a454c61 12:302363c6254a
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Utilities]--> 3 <!--Proposed Tool Section: [Utilities]-->
4 <tool id="MultiplexResolver" name="MultiplexResolver" version="2.2.0"> 4 <tool id="MultiplexResolver" name="MultiplexResolver" version="2.3.0">
5 <description>Completes peptide multiplets and resolves conflicts within them.</description> 5 <description>Completes peptide multiplets and resolves conflicts within them.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">MultiplexResolver</token> 7 <token name="@EXECUTABLE@">MultiplexResolver</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>MultiplexResolver 13 <command detect_errors="aggressive"><![CDATA[MultiplexResolver
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
75 #end if 75 #end if
76 #if $adv_opts.param_labels_ICPL10: 76 #if $adv_opts.param_labels_ICPL10:
77 -labels:ICPL10 $adv_opts.param_labels_ICPL10 77 -labels:ICPL10 $adv_opts.param_labels_ICPL10
78 #end if 78 #end if
79 #end if 79 #end if
80 </command> 80 ]]></command>
81 <inputs> 81 <inputs>
82 <param name="param_in" type="data" format="consensusxml" optional="False" label="Peptide multiplets with assigned sequence information" help="(-in) "/> 82 <param name="param_in" type="data" format="consensusxml" optional="False" label="Peptide multiplets with assigned sequence information" help="(-in) "/>
83 <param name="param_algorithm_labels" type="text" size="30" value="[][Lys8,Arg10]" label="Labels used for labelling the samples" help="(-labels) [...] specifies the labels for a single sample. For example &lt;br&gt; &lt;br&gt;[][Lys8,Arg10] ... SILAC &lt;br&gt;[][Lys4,Arg6][Lys8,Arg10] ... triple-SILAC &lt;br&gt;[Dimethyl0][Dimethyl6] ... Dimethyl &lt;br&gt;[Dimethyl0][Dimethyl4][Dimethyl8] ... triple Dimethyl &lt;br&gt;[ICPL0][ICPL4][ICPL6][ICPL10] ... ICPL"> 83 <param name="param_algorithm_labels" type="text" size="30" value="[][Lys8,Arg10]" label="Labels used for labelling the samples" help="(-labels) [...] specifies the labels for a single sample. For example &lt;br&gt; &lt;br&gt;[][Lys8,Arg10] ... SILAC &lt;br&gt;[][Lys4,Arg6][Lys8,Arg10] ... triple-SILAC &lt;br&gt;[Dimethyl0][Dimethyl6] ... Dimethyl &lt;br&gt;[Dimethyl0][Dimethyl4][Dimethyl8] ... triple Dimethyl &lt;br&gt;[ICPL0][ICPL4][ICPL6][ICPL10] ... ICPL">
84 <sanitizer> 84 <sanitizer>
85 <valid initial="string.printable"> 85 <valid initial="string.printable">
113 <data name="param_out_conflicts" format="consensusxml"/> 113 <data name="param_out_conflicts" format="consensusxml"/>
114 </outputs> 114 </outputs>
115 <help>Completes peptide multiplets and resolves conflicts within them. 115 <help>Completes peptide multiplets and resolves conflicts within them.
116 116
117 117
118 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_MultiplexResolver.html</help> 118 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_MultiplexResolver.html</help>
119 </tool> 119 </tool>