Mercurial > repos > galaxyp > openms_metaprosip

comparison MetaProSIP.xml @ 1:5fc08238d0ce draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb
author galaxyp
date Tue, 18 Apr 2017 15:43:02 -0400
parents 0283517872f8
children 7c65b5fce28e
comparison
equal deleted inserted replaced
0:0283517872f8 1:5fc08238d0ce
50 #end if 50 #end if
51 #if $param_weight_merge_window: 51 #if $param_weight_merge_window:
52 -weight_merge_window $param_weight_merge_window 52 -weight_merge_window $param_weight_merge_window
53 #end if 53 #end if
54 #if $param_plot_extension: 54 #if $param_plot_extension:
55 -plot_extension $param_plot_extension 55 -plot_extension
56 #if " " in str($param_plot_extension):
57 "$param_plot_extension"
58 #else
59 $param_plot_extension
60 #end if
56 #end if 61 #end if
57 #if $param_qc_output_directory: 62 #if $param_qc_output_directory:
58 -qc_output_directory "$param_qc_output_directory" 63 -qc_output_directory "$param_qc_output_directory"
59 #end if 64 #end if
60 #if $param_labeling_element: 65 #if $param_labeling_element:
61 -labeling_element $param_labeling_element 66 -labeling_element
67 #if " " in str($param_labeling_element):
68 "$param_labeling_element"
69 #else
70 $param_labeling_element
71 #end if
62 #end if 72 #end if
63 #if $param_use_unassigned_ids: 73 #if $param_use_unassigned_ids:
64 -use_unassigned_ids 74 -use_unassigned_ids
65 #end if 75 #end if
66 #if $param_use_averagine_ids: 76 #if $param_use_averagine_ids:
102 #end if 112 #end if
103 #if $adv_opts.param_score_plot_yaxis_min: 113 #if $adv_opts.param_score_plot_yaxis_min:
104 -score_plot_yaxis_min $adv_opts.param_score_plot_yaxis_min 114 -score_plot_yaxis_min $adv_opts.param_score_plot_yaxis_min
105 #end if 115 #end if
106 #if $adv_opts.param_collect_method: 116 #if $adv_opts.param_collect_method:
107 -collect_method $adv_opts.param_collect_method 117 -collect_method
118 #if " " in str($adv_opts.param_collect_method):
119 "$adv_opts.param_collect_method"
120 #else
121 $adv_opts.param_collect_method
122 #end if
108 #end if 123 #end if
109 #if $adv_opts.param_lowRIA_correlation_threshold: 124 #if $adv_opts.param_lowRIA_correlation_threshold:
110 -lowRIA_correlation_threshold $adv_opts.param_lowRIA_correlation_threshold 125 -lowRIA_correlation_threshold $adv_opts.param_lowRIA_correlation_threshold
111 #end if 126 #end if
112 #if $adv_opts.param_force: 127 #if $adv_opts.param_force: