Mercurial > repos > galaxyp > openms_featurelinkerlabeled

diff FeatureLinkerLabeled.xml @ 12:5da10bf1107a draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 05:32:01 -0400
parents 42bece8e539d
children 1fdc04031fd7
line wrap: on
line diff
--- a/FeatureLinkerLabeled.xml	Mon Feb 12 08:43:17 2018 -0500
+++ b/FeatureLinkerLabeled.xml	Wed May 15 05:32:01 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Map Alignment]-->
-<tool id="FeatureLinkerLabeled" name="FeatureLinkerLabeled" version="2.2.0">
+<tool id="FeatureLinkerLabeled" name="FeatureLinkerLabeled" version="2.3.0">
   <description>Groups corresponding isotope-labeled features in a feature map.</description>
   <macros>
     <token name="@EXECUTABLE@">FeatureLinkerLabeled</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>FeatureLinkerLabeled
+  <command detect_errors="aggressive"><![CDATA[FeatureLinkerLabeled
 
 #if $param_in:
   -in $param_in
@@ -57,7 +57,7 @@
   -algorithm:mrm
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="featurexml" optional="False" label="Input file" help="(-in) "/>
     <param name="param_algorithm_rt_estimate" display="radio" type="select" optional="False" value="true" label="If 'true' the optimal RT pair distance and deviation are estimated by fitting a gaussian distribution to the histogram of pair distance" help="(-rt_estimate) Note that this works only datasets with a significant amount of pairs! If 'false' the parameters 'rt_pair_dist', 'rt_dev_low' and 'rt_dev_high' define the optimal distance">
@@ -89,5 +89,5 @@
   <help>Groups corresponding isotope-labeled features in a feature map.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FeatureLinkerLabeled.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_FeatureLinkerLabeled.html</help>
 </tool>