Mercurial > repos > galaxyp > openms_featurelinkerlabeled

comparison FeatureLinkerLabeled.xml @ 12:5da10bf1107a draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 05:32:01 -0400
parents 42bece8e539d
children 1fdc04031fd7
comparison
equal deleted inserted replaced
11:8f72fa477cc7 12:5da10bf1107a
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Map Alignment]--> 3 <!--Proposed Tool Section: [Map Alignment]-->
4 <tool id="FeatureLinkerLabeled" name="FeatureLinkerLabeled" version="2.2.0"> 4 <tool id="FeatureLinkerLabeled" name="FeatureLinkerLabeled" version="2.3.0">
5 <description>Groups corresponding isotope-labeled features in a feature map.</description> 5 <description>Groups corresponding isotope-labeled features in a feature map.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">FeatureLinkerLabeled</token> 7 <token name="@EXECUTABLE@">FeatureLinkerLabeled</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>FeatureLinkerLabeled 13 <command detect_errors="aggressive"><![CDATA[FeatureLinkerLabeled
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
55 #end if 55 #end if
56 #if $adv_opts.param_algorithm_mrm: 56 #if $adv_opts.param_algorithm_mrm:
57 -algorithm:mrm 57 -algorithm:mrm
58 #end if 58 #end if
59 #end if 59 #end if
60 </command> 60 ]]></command>
61 <inputs> 61 <inputs>
62 <param name="param_in" type="data" format="featurexml" optional="False" label="Input file" help="(-in) "/> 62 <param name="param_in" type="data" format="featurexml" optional="False" label="Input file" help="(-in) "/>
63 <param name="param_algorithm_rt_estimate" display="radio" type="select" optional="False" value="true" label="If 'true' the optimal RT pair distance and deviation are estimated by fitting a gaussian distribution to the histogram of pair distance" help="(-rt_estimate) Note that this works only datasets with a significant amount of pairs! If 'false' the parameters 'rt_pair_dist', 'rt_dev_low' and 'rt_dev_high' define the optimal distance"> 63 <param name="param_algorithm_rt_estimate" display="radio" type="select" optional="False" value="true" label="If 'true' the optimal RT pair distance and deviation are estimated by fitting a gaussian distribution to the histogram of pair distance" help="(-rt_estimate) Note that this works only datasets with a significant amount of pairs! If 'false' the parameters 'rt_pair_dist', 'rt_dev_low' and 'rt_dev_high' define the optimal distance">
64 <option value="true" selected="true">true</option> 64 <option value="true" selected="true">true</option>
65 <option value="false">false</option> 65 <option value="false">false</option>
87 <data name="param_out" format="consensusxml"/> 87 <data name="param_out" format="consensusxml"/>
88 </outputs> 88 </outputs>
89 <help>Groups corresponding isotope-labeled features in a feature map. 89 <help>Groups corresponding isotope-labeled features in a feature map.
90 90
91 91
92 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FeatureLinkerLabeled.html</help> 92 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_FeatureLinkerLabeled.html</help>
93 </tool> 93 </tool>