diff DTAExtractor.xml @ 13:5f65ab3bcbb9 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 05:52:59 -0400
parents ef927be99d2b
children 91d3ebe486f9
line wrap: on
line diff
--- a/DTAExtractor.xml	Mon Feb 12 08:48:46 2018 -0500
+++ b/DTAExtractor.xml	Wed May 15 05:52:59 2019 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
-<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [File Handling]-->
-<tool id="DTAExtractor" name="DTAExtractor" version="2.2.0.1">
+<tool id="DTAExtractor" name="DTAExtractor" version="2.3.0">
   <description>Extracts spectra of an MS run file to several files in DTA format.</description>
   <macros>
     <token name="@EXECUTABLE@">DTAExtractor</token>
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>DTAExtractor
+  <command detect_errors="aggressive"><![CDATA[DTAExtractor
 
 #if $param_in:
   -in $param_in
@@ -33,7 +33,7 @@
 #end if
 #end if
 &gt; $param_stdout
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
     <param name="param_out" type="text" size="30" label="base name of DTA output files (RT, m/z and extension are appended)" help="(-out) ">
@@ -78,5 +78,5 @@
   <help>Extracts spectra of an MS run file to several files in DTA format.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_DTAExtractor.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_DTAExtractor.html</help>
 </tool>