Mercurial > repos > galaxyp > openms_dtaextractor

comparison DTAExtractor.xml @ 13:5f65ab3bcbb9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 05:52:59 -0400
parents ef927be99d2b
children 91d3ebe486f9
comparison
equal deleted inserted replaced
12:c82d62d9e38a 13:5f65ab3bcbb9
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [File Handling]--> 3 <!--Proposed Tool Section: [File Handling]-->
4 <tool id="DTAExtractor" name="DTAExtractor" version="2.2.0.1"> 4 <tool id="DTAExtractor" name="DTAExtractor" version="2.3.0">
5 <description>Extracts spectra of an MS run file to several files in DTA format.</description> 5 <description>Extracts spectra of an MS run file to several files in DTA format.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">DTAExtractor</token> 7 <token name="@EXECUTABLE@">DTAExtractor</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>DTAExtractor 13 <command detect_errors="aggressive"><![CDATA[DTAExtractor
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
31 #if $adv_opts.param_force: 31 #if $adv_opts.param_force:
32 -force 32 -force
33 #end if 33 #end if
34 #end if 34 #end if
35 &gt; $param_stdout 35 &gt; $param_stdout
36 </command> 36 ]]></command>
37 <inputs> 37 <inputs>
38 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> 38 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
39 <param name="param_out" type="text" size="30" label="base name of DTA output files (RT, m/z and extension are appended)" help="(-out) "> 39 <param name="param_out" type="text" size="30" label="base name of DTA output files (RT, m/z and extension are appended)" help="(-out) ">
40 <sanitizer> 40 <sanitizer>
41 <valid initial="string.printable"> 41 <valid initial="string.printable">
76 <data name="param_stdout" format="txt" label="Output from stdout"/> 76 <data name="param_stdout" format="txt" label="Output from stdout"/>
77 </outputs> 77 </outputs>
78 <help>Extracts spectra of an MS run file to several files in DTA format. 78 <help>Extracts spectra of an MS run file to several files in DTA format.
79 79
80 80
81 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_DTAExtractor.html</help> 81 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_DTAExtractor.html</help>
82 </tool> 82 </tool>