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comparison BaselineFilter.xml @ 12:69b38f433cf6 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 05:18:37 -0400
parents a97a8c15badb
children 5892521f74c1
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11:b6298c9a8a10 12:69b38f433cf6
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Signal processing and preprocessing]--> 3 <!--Proposed Tool Section: [Signal processing and preprocessing]-->
4 <tool id="BaselineFilter" name="BaselineFilter" version="2.2.0"> 4 <tool id="BaselineFilter" name="BaselineFilter" version="2.3.0">
5 <description>Removes the baseline from profile spectra using a top-hat filter.</description> 5 <description>Removes the baseline from profile spectra using a top-hat filter.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">BaselineFilter</token> 7 <token name="@EXECUTABLE@">BaselineFilter</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>BaselineFilter 13 <command detect_errors="aggressive"><![CDATA[BaselineFilter
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
40 #if $adv_opts.adv_opts_selector=='advanced': 40 #if $adv_opts.adv_opts_selector=='advanced':
41 #if $adv_opts.param_force: 41 #if $adv_opts.param_force:
42 -force 42 -force
43 #end if 43 #end if
44 #end if 44 #end if
45 </command> 45 ]]></command>
46 <inputs> 46 <inputs>
47 <param name="param_in" type="data" format="mzml" optional="False" label="input raw data file" help="(-in) "/> 47 <param name="param_in" type="data" format="mzml" optional="False" label="input raw data file" help="(-in) "/>
48 <param name="param_struc_elem_length" type="float" value="3.0" label="Length of the structuring element (should be wider than maximal peak width - see documentation)" help="(-struc_elem_length) "/> 48 <param name="param_struc_elem_length" type="float" value="3.0" label="Length of the structuring element (should be wider than maximal peak width - see documentation)" help="(-struc_elem_length) "/>
49 <param name="param_struc_elem_unit" display="radio" type="select" optional="False" value="Thomson" label="Unit of 'struc_elem_length' paramete" help="(-struc_elem_unit) "> 49 <param name="param_struc_elem_unit" display="radio" type="select" optional="False" value="Thomson" label="Unit of 'struc_elem_length' paramete" help="(-struc_elem_unit) ">
50 <option value="Thomson" selected="true">Thomson</option> 50 <option value="Thomson" selected="true">Thomson</option>
70 <data name="param_out" format="mzml"/> 70 <data name="param_out" format="mzml"/>
71 </outputs> 71 </outputs>
72 <help>Removes the baseline from profile spectra using a top-hat filter. 72 <help>Removes the baseline from profile spectra using a top-hat filter.
73 73
74 74
75 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_BaselineFilter.html</help> 75 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_BaselineFilter.html</help>
76 </tool> 76 </tool>