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view DeMeanderize.xml @ 4:60a33af52042 draft default tip
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author | galaxyp |
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date | Wed, 13 May 2015 21:19:44 -0400 |
parents | 3070d71e0e5c |
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<?xml version='1.0' encoding='UTF-8'?> <tool id="DeMeanderize" name="DeMeanderize" version="2.0.0"> <description>Orders the spectra of MALDI spotting plates correctly.</description> <macros> <token name="@EXECUTABLE@">DeMeanderize</token> <import>macros.xml</import> </macros> <expand macro="stdio"/> <expand macro="requirements"/> <command>DeMeanderize #if $param_in: -in $param_in #end if #if $param_out: -out $param_out #end if #if $param_num_spots_per_row: -num_spots_per_row $param_num_spots_per_row #end if -threads \${GALAXY_SLOTS:-24} #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_RT_distance: -RT_distance $adv_opts.param_RT_distance #end if #if $adv_opts.param_force: -force #end if #end if </command> <inputs> <param name="param_in" type="data" format="mzml" optional="False" label="Input experiment file, containing the wrongly sorted spectra" help="(-in) "/> <param name="param_num_spots_per_row" type="integer" min="1" optional="True" value="48" label="Number of spots in one column, until next row is spotted" help="(-num_spots_per_row) "/> <expand macro="advanced_options"> <param name="param_RT_distance" type="float" min="0.0" optional="True" value="1.0" label="RT distance between two spots which is used to calculated pseudo RT" help="(-RT_distance) "/> <param name="param_force" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_out" format="mzml"/> </outputs> <help>**What it does** Orders the spectra of MALDI spotting plates correctly. For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_DeMeanderize.html</help> <expand macro="references"/> </tool>