Mercurial > repos > galaxyp > openms
diff OpenSwathMzMLFileCacher.xml @ 0:3070d71e0e5c draft
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author | bgruening |
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date | Thu, 16 Apr 2015 08:37:04 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/OpenSwathMzMLFileCacher.xml Thu Apr 16 08:37:04 2015 -0400 @@ -0,0 +1,45 @@ +<?xml version='1.0' encoding='UTF-8'?> +<tool id="OpenSwathMzMLFileCacher" name="OpenSwathMzMLFileCacher" version="2.0.0"> + <description>This tool caches the spectra and chromatogram data of an mzML to disk.</description> + <macros> + <token name="@EXECUTABLE@">OpenSwathMzMLFileCacher</token> + <import>macros.xml</import> + </macros> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>OpenSwathMzMLFileCacher + +#if $param_in: + -in $param_in +#end if +#if $param_out: + -out $param_out +#end if +#if $param_convert_back: + -convert_back +#end if +-threads \${GALAXY_SLOTS:-24} +#if $adv_opts.adv_opts_selector=='advanced': + #if $adv_opts.param_force: + -force +#end if +#end if +</command> + <inputs> + <param name="param_in" type="data" format="mzml" optional="False" label="transition file ('csv')" help="(-in) "/> + <param name="param_convert_back" type="boolean" truevalue="-convert_back" falsevalue="" checked="false" optional="True" label="Convert back to mzML" help="(-convert_back) "/> + <expand macro="advanced_options"> + <param name="param_force" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> + </expand> + </inputs> + <outputs> + <data name="param_out" format="data"/> + </outputs> + <help>**What it does** + +This tool caches the spectra and chromatogram data of an mzML to disk. + + +For more information, visit </help> + <expand macro="references"/> +</tool>