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comparison OpenSwathMzMLFileCacher.xml @ 0:3070d71e0e5c draft

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author bgruening
date Thu, 16 Apr 2015 08:37:04 -0400
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-1:000000000000 0:3070d71e0e5c
1 <?xml version='1.0' encoding='UTF-8'?>
2 <tool id="OpenSwathMzMLFileCacher" name="OpenSwathMzMLFileCacher" version="2.0.0">
3 <description>This tool caches the spectra and chromatogram data of an mzML to disk.</description>
4 <macros>
5 <token name="@EXECUTABLE@">OpenSwathMzMLFileCacher</token>
6 <import>macros.xml</import>
7 </macros>
8 <expand macro="stdio"/>
9 <expand macro="requirements"/>
10 <command>OpenSwathMzMLFileCacher
11
12 #if $param_in:
13 -in $param_in
14 #end if
15 #if $param_out:
16 -out $param_out
17 #end if
18 #if $param_convert_back:
19 -convert_back
20 #end if
21 -threads \${GALAXY_SLOTS:-24}
22 #if $adv_opts.adv_opts_selector=='advanced':
23 #if $adv_opts.param_force:
24 -force
25 #end if
26 #end if
27 </command>
28 <inputs>
29 <param name="param_in" type="data" format="mzml" optional="False" label="transition file ('csv')" help="(-in) "/>
30 <param name="param_convert_back" type="boolean" truevalue="-convert_back" falsevalue="" checked="false" optional="True" label="Convert back to mzML" help="(-convert_back) "/>
31 <expand macro="advanced_options">
32 <param name="param_force" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
33 </expand>
34 </inputs>
35 <outputs>
36 <data name="param_out" format="data"/>
37 </outputs>
38 <help>**What it does**
39
40 This tool caches the spectra and chromatogram data of an mzML to disk.
41
42
43 For more information, visit </help>
44 <expand macro="references"/>
45 </tool>