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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <tool id="SequenceCoverageCalculator" name="SequenceCoverageCalculator" version="2.0.0">
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3 <description>Prints information about idXML files.</description>
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4 <macros>
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5 <token name="@EXECUTABLE@">SequenceCoverageCalculator</token>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="stdio"/>
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9 <expand macro="requirements"/>
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10 <command>SequenceCoverageCalculator
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11
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12 #if $param_in_database:
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13 -in_database $param_in_database
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14 #end if
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15 #if $param_in_peptides:
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16 -in_peptides $param_in_peptides
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17 #end if
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18 #if $param_out:
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19 -out $param_out
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20 #end if
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21 -threads \${GALAXY_SLOTS:-24}
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22 #if $adv_opts.adv_opts_selector=='advanced':
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23 #if $adv_opts.param_force:
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24 -force
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25 #end if
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26 #end if
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27 </command>
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28 <inputs>
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29 <param name="param_in_database" type="data" format="fasta" optional="False" label="input file containing the database in FASTA format" help="(-in_database) "/>
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30 <param name="param_in_peptides" type="data" format="idxml" optional="False" label="input file containing the identified peptides" help="(-in_peptides) "/>
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31 <expand macro="advanced_options">
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32 <param name="param_force" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
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33 </expand>
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34 </inputs>
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35 <outputs>
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36 <data name="param_out" format="txt"/>
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37 </outputs>
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38 <help>**What it does**
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39
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40 Prints information about idXML files.
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41
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42
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43 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SequenceCoverageCalculator.html</help>
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44 <expand macro="references"/>
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45 </tool>
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