Mercurial > repos > galaxyp > maxquant

diff test-data/02/config.yml @ 6:f2f79f0be7d1 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit f63ff6d5d0c44012a17e87293811765951655bd5"
author galaxyp
date Mon, 01 Jun 2020 15:50:52 +0000
parents 1cdde5989a2d
children 057bf124c80e
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--- a/test-data/02/config.yml	Wed May 06 17:34:40 2020 +0000
+++ b/test-data/02/config.yml	Mon Jun 01 15:50:52 2020 +0000
@@ -14,6 +14,11 @@
             advancedSiteIntensities: True
             matchBetweenRuns: False
             includeContaminants: False
+            minPeptideLengthForUnspecificSearch: 7
+            maxPeptideLengthForUnspecificSearch: 24
+            decoyMode: randomize
+            peptideFdr: 0.5
+            proteinFdr: 0.4
             quantMode: 0
             restrictProteinQuantification: True
             restrictMods: [Pro5,Pro6]
@@ -27,7 +32,7 @@
                 enzymeMode: 0
                 lcmsRunType: 'Reporter ion MS2'
                 reporterMassTolerance: 0.003
-                reporterPif: 0.6
+                reporterPif: 0
                 reporterFraction: 0
                 reporterBasePeakRatio: 0
                 filterPif: False