Mercurial > repos > galaxyp > maxquant

comparison test-data/02/config.yml @ 6:f2f79f0be7d1 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/maxquant commit f63ff6d5d0c44012a17e87293811765951655bd5"
author galaxyp
date Mon, 01 Jun 2020 15:50:52 +0000
parents 1cdde5989a2d
children 057bf124c80e
comparison
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5:1cdde5989a2d 6:f2f79f0be7d1
12 lfqStabilizeLargeRatios: True 12 lfqStabilizeLargeRatios: True
13 lfqRequireMsms: True 13 lfqRequireMsms: True
14 advancedSiteIntensities: True 14 advancedSiteIntensities: True
15 matchBetweenRuns: False 15 matchBetweenRuns: False
16 includeContaminants: False 16 includeContaminants: False
17 minPeptideLengthForUnspecificSearch: 7
18 maxPeptideLengthForUnspecificSearch: 24
19 decoyMode: randomize
20 peptideFdr: 0.5
21 proteinFdr: 0.4
17 quantMode: 0 22 quantMode: 0
18 restrictProteinQuantification: True 23 restrictProteinQuantification: True
19 restrictMods: [Pro5,Pro6] 24 restrictMods: [Pro5,Pro6]
20 useCounterparts: True 25 useCounterparts: True
21 paramGroups: 26 paramGroups:
25 variableModifications: [Oxidation (M)] 30 variableModifications: [Oxidation (M)]
26 enzymes: [Trypsin/P] 31 enzymes: [Trypsin/P]
27 enzymeMode: 0 32 enzymeMode: 0
28 lcmsRunType: 'Reporter ion MS2' 33 lcmsRunType: 'Reporter ion MS2'
29 reporterMassTolerance: 0.003 34 reporterMassTolerance: 0.003
30 reporterPif: 0.6 35 reporterPif: 0
31 reporterFraction: 0 36 reporterFraction: 0
32 reporterBasePeakRatio: 0 37 reporterBasePeakRatio: 0
33 filterPif: False 38 filterPif: False
34 isobaricLabels: 39 isobaricLabels:
35 - ['TMT2plex-Lys126','TMT2plex-Nter126',0.0,0.0,6.7,3.0,True] 40 - ['TMT2plex-Lys126','TMT2plex-Nter126',0.0,0.0,6.7,3.0,True]