Mercurial > repos > galaxyp > eggnog_mapper

diff test-data/make_comp_file.sh @ 0:2354d9b43a91 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 9dbc338105e83091a636166030f618ec881c5f6f
author galaxyp
date Tue, 31 Oct 2017 14:17:30 -0400
parents
children 1d6c4af4b7bc
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/make_comp_file.sh	Tue Oct 31 14:17:30 2017 -0400
@@ -0,0 +1,24 @@
+#!/bin/bash
+
+base_path=$1
+
+emapper.py \
+    -i $base_path/test-data/nlim_fragment.fasta \
+    --output HMM_nlim \
+    --output_dir $base_path/test-data \
+    --override \
+    --database $base_path/test-data/cached_locally/hmmdb_levels/ENOG411CB2I/ENOG411CB2I \
+    --data_dir $base_path/test-data/cached_locally \
+    --no_refine\
+    --no_annot \
+    --no_file_comments
+
+emapper.py \
+    -i $base_path/test-data/nlim_fragment.fasta \
+    --output DIA_nlim \
+    --output_dir $base_path/test-data \
+    --override \
+    -m diamond \
+    --data_dir $base_path/test-data/cached_locally \
+    --no_file_comments \
+    --no_annot