Mercurial > repos > galaxyp > eggnog_mapper

comparison test-data/make_comp_file.sh @ 0:2354d9b43a91 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit 9dbc338105e83091a636166030f618ec881c5f6f
author galaxyp
date Tue, 31 Oct 2017 14:17:30 -0400
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children 1d6c4af4b7bc
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-1:000000000000 0:2354d9b43a91
1 #!/bin/bash
2
3 base_path=$1
4
5 emapper.py \
6 -i $base_path/test-data/nlim_fragment.fasta \
7 --output HMM_nlim \
8 --output_dir $base_path/test-data \
9 --override \
10 --database $base_path/test-data/cached_locally/hmmdb_levels/ENOG411CB2I/ENOG411CB2I \
11 --data_dir $base_path/test-data/cached_locally \
12 --no_refine\
13 --no_annot \
14 --no_file_comments
15
16 emapper.py \
17 -i $base_path/test-data/nlim_fragment.fasta \
18 --output DIA_nlim \
19 --output_dir $base_path/test-data \
20 --override \
21 -m diamond \
22 --data_dir $base_path/test-data/cached_locally \
23 --no_file_comments \
24 --no_annot