Mercurial > repos > galaxyp > eggnog_mapper

diff test-data/make_comp_file.sh @ 6:1d6c4af4b7bc draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper commit fd234f7532b34a1b6ced0d3ac53a8f42348e23f7"
author galaxyp
date Fri, 19 Feb 2021 18:53:12 +0000
parents 2354d9b43a91
children
line wrap: on
line diff
--- a/test-data/make_comp_file.sh	Mon Nov 11 11:48:52 2019 -0500
+++ b/test-data/make_comp_file.sh	Fri Feb 19 18:53:12 2021 +0000
@@ -4,17 +4,6 @@
 
 emapper.py \
     -i $base_path/test-data/nlim_fragment.fasta \
-    --output HMM_nlim \
-    --output_dir $base_path/test-data \
-    --override \
-    --database $base_path/test-data/cached_locally/hmmdb_levels/ENOG411CB2I/ENOG411CB2I \
-    --data_dir $base_path/test-data/cached_locally \
-    --no_refine\
-    --no_annot \
-    --no_file_comments
-
-emapper.py \
-    -i $base_path/test-data/nlim_fragment.fasta \
     --output DIA_nlim \
     --output_dir $base_path/test-data \
     --override \