Mercurial > repos > galaxyp > eggnog_mapper

comparison test-data/make_comp_file.sh @ 6:1d6c4af4b7bc draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper commit fd234f7532b34a1b6ced0d3ac53a8f42348e23f7"
author galaxyp
date Fri, 19 Feb 2021 18:53:12 +0000
parents 2354d9b43a91
children
comparison
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5:59501122d153 6:1d6c4af4b7bc
1 #!/bin/bash 1 #!/bin/bash
2 2
3 base_path=$1 3 base_path=$1
4
5 emapper.py \
6 -i $base_path/test-data/nlim_fragment.fasta \
7 --output HMM_nlim \
8 --output_dir $base_path/test-data \
9 --override \
10 --database $base_path/test-data/cached_locally/hmmdb_levels/ENOG411CB2I/ENOG411CB2I \
11 --data_dir $base_path/test-data/cached_locally \
12 --no_refine\
13 --no_annot \
14 --no_file_comments
15 4
16 emapper.py \ 5 emapper.py \
17 -i $base_path/test-data/nlim_fragment.fasta \ 6 -i $base_path/test-data/nlim_fragment.fasta \
18 --output DIA_nlim \ 7 --output DIA_nlim \
19 --output_dir $base_path/test-data \ 8 --output_dir $base_path/test-data \