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comparison dbbuilder.xml @ 2:0127e0bdf937 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dbbuilder commit 7480b93ed88eb017041b16e1181a481f7b3334d3
author galaxyp
date Tue, 02 May 2017 08:51:48 -0400
parents a2c05481cae2
children 643d9192e3f5
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1:a2c05481cae2 2:0127e0bdf937
12 <!-- http://maxquant.org/contaminants.zip --> 12 <!-- http://maxquant.org/contaminants.zip -->
13 <!-- ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.protein.faa.gz--> 13 <!-- ftp://ftp.ncbi.nih.gov/refseq/H_sapiens/mRNA_Prot/human.protein.faa.gz-->
14 <command> 14 <command>
15 <![CDATA[ 15 <![CDATA[
16 #if $source.from == "uniprot" 16 #if $source.from == "uniprot"
17 #set $url = "http://www.uniprot.org/uniprot/?query=taxonomy%3a%22" + str($source.taxon) + "%22" + str($source.set) + str($source.reviewed) + "&force=yes&format=fasta" + str($source.include_isoform) 17 #set $url = 'http://www.uniprot.org/uniprot/?query=taxonomy:"' + str($source.taxon) + '"' + str($source.set) + str($source.reviewed) + '&force=yes&format=fasta' + str($source.include_isoform)
18 #set $type = "direct" 18 #set $type = "direct"
19 #elif $source.from == "cRAP" 19 #elif $source.from == "cRAP"
20 ##set $url = "ftp://ftp.thegpm.org/fasta/cRAP/crap.fasta" 20 ##set $url = "ftp://ftp.thegpm.org/fasta/cRAP/crap.fasta"
21 #set $url = "https://raw.githubusercontent.com/pravs3683/cRAP/master/cRAP_protein_database.fasta" 21 #set $url = "https://raw.githubusercontent.com/pravs3683/cRAP/master/cRAP_protein_database.fasta"
22 #set $type = "direct" 22 #set $type = "direct"