Mercurial > repos > galaxyp > custom_pro_db_annotation_data_manager

diff data_manager/customProDB_annotation.xml @ 3:af0a098e15bd draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/data_manager_customProDB commit 141369f97aa2804d2bbfd9ed620ea2a5574994c2-dirty
author galaxyp
date Wed, 27 Jan 2016 16:46:54 -0500
parents 4c77cf5a2977
children b42974daa659
line wrap: on
line diff
--- a/data_manager/customProDB_annotation.xml	Tue Jan 26 18:46:21 2016 -0500
+++ b/data_manager/customProDB_annotation.xml	Wed Jan 27 16:46:54 2016 -0500
@@ -3,6 +3,7 @@
     <command interpreter="Rscript --vanilla">customProDB_annotation.R
       --outputFile "${out_file}"
       --dbkey "${dbkey}"
+      --dbkey_description "${ dbkey.get_display_text() }"
       2&gt;&amp;1
     </command>
     <stdio>
@@ -10,11 +11,6 @@
         <exit_code range="1:" />
     </stdio>
     <inputs>
-        <!--<param name="all_fasta_source" type="select" label="Source FASTA Sequence">
-            <options from_data_table="all_fasta"/>
-        </param>
-        <param type="text" name="sequence_name" value="" label="Name of sequence" />
-        <param type="text" name="sequence_id" value="" label="ID for sequence" />-->
         <param type="genomebuild" name="dbkey" value="" label="UCSC dbKey for reference genome" />
     </inputs>
     <outputs>