Mercurial > repos > galaxyp > custom_pro_db_annotation_data_manager

comparison data_manager/customProDB_annotation.xml @ 3:af0a098e15bd draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/data_manager_customProDB commit 141369f97aa2804d2bbfd9ed620ea2a5574994c2-dirty
author galaxyp
date Wed, 27 Jan 2016 16:46:54 -0500
parents 4c77cf5a2977
children b42974daa659
comparison
equal deleted inserted replaced
2:20a1b026b798 3:af0a098e15bd
1 <tool id="custom_pro_db_annotation_data_manager" name="CustomProDB Annotation" tool_type="manage_data" version="0.0.1"> 1 <tool id="custom_pro_db_annotation_data_manager" name="CustomProDB Annotation" tool_type="manage_data" version="0.0.1">
2 <description>builder</description> 2 <description>builder</description>
3 <command interpreter="Rscript --vanilla">customProDB_annotation.R 3 <command interpreter="Rscript --vanilla">customProDB_annotation.R
4 --outputFile "${out_file}" 4 --outputFile "${out_file}"
5 --dbkey "${dbkey}" 5 --dbkey "${dbkey}"
6 --dbkey_description "${ dbkey.get_display_text() }"
6 2&gt;&amp;1 7 2&gt;&amp;1
7 </command> 8 </command>
8 <stdio> 9 <stdio>
9 <exit_code range=":-1" /> 10 <exit_code range=":-1" />
10 <exit_code range="1:" /> 11 <exit_code range="1:" />
11 </stdio> 12 </stdio>
12 <inputs> 13 <inputs>
13 <!--<param name="all_fasta_source" type="select" label="Source FASTA Sequence">
14 <options from_data_table="all_fasta"/>
15 </param>
16 <param type="text" name="sequence_name" value="" label="Name of sequence" />
17 <param type="text" name="sequence_id" value="" label="ID for sequence" />-->
18 <param type="genomebuild" name="dbkey" value="" label="UCSC dbKey for reference genome" /> 14 <param type="genomebuild" name="dbkey" value="" label="UCSC dbKey for reference genome" />
19 </inputs> 15 </inputs>
20 <outputs> 16 <outputs>
21 <data name="out_file" format="data_manager_json"/> 17 <data name="out_file" format="data_manager_json"/>
22 </outputs> 18 </outputs>